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Fam13c family with sequence similarity 13, member C [ Mus musculus (house mouse) ]

Gene ID: 71721, updated on 5-Mar-2024

Summary

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Official Symbol
Fam13cprovided by MGI
Official Full Name
family with sequence similarity 13, member Cprovided by MGI
Primary source
MGI:MGI:1918971
See related
Ensembl:ENSMUSG00000043259 AllianceGenome:MGI:1918971
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA1796; 1200015N20Rik; C030038O19Rik
Summary
Is expressed in nasal cavity epithelium; olfactory cortex marginal layer; olfactory epithelium; and telencephalon ventricular layer. Orthologous to human FAM13C (family with sequence similarity 13 member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in frontal lobe adult (RPKM 7.6), cortex adult (RPKM 5.7) and 16 other tissues See more
Orthologs
human all
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Genomic context

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See Fam13c in Genome Data Viewer
Location:
10 B5.3; 10 36.68 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (70274981..70394566)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (70439972..70558736)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27079 Neighboring gene predicted gene, 40687 Neighboring gene predicted gene, 33704 Neighboring gene STARR-seq mESC enhancer starr_27081 Neighboring gene STARR-seq mESC enhancer starr_27082 Neighboring gene STARR-seq mESC enhancer starr_27083 Neighboring gene putative 60S ribosomal protein L39-like 5 Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene phytanoyl-CoA hydroxylase interacting protein-like Neighboring gene RIKEN cDNA D630013N20 gene Neighboring gene expressed sequence BB187676 Neighboring gene predicted gene, 51772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • KIAA1796

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM13C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001143776.2 → NP_001137248.1  protein FAM13C isoform 2

    See identical proteins and their annotated locations for NP_001137248.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The resulting isoform (2) lacks one internal residue, compared to isoform 1.
    Source sequence(s)
    AC079681, AC122896
    Consensus CDS
    CCDS56709.1
    UniProtKB/TrEMBL
    A1L311, Q8BLV7
    Related
    ENSMUSP00000134648.2, ENSMUST00000173042.9

  2. NM_001143777.2 → NP_001137249.1  protein FAM13C isoform 3

    See identical proteins and their annotated locations for NP_001137249.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate 5' splice pattern and uses a downstream start codon, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC079681, AC122896
    Consensus CDS
    CCDS48592.1
    UniProtKB/TrEMBL
    A1L311, G3X9S1
    Related
    ENSMUSP00000101076.3, ENSMUST00000105436.9

  3. NM_001359551.2 → NP_001346480.1  protein FAM13C isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC079681, AC122896
    UniProtKB/TrEMBL
    A1L311

  4. NM_024244.5 → NP_077206.3  protein FAM13C isoform 1

    See identical proteins and their annotated locations for NP_077206.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC079681, AC122896
    Consensus CDS
    CCDS35932.1
    UniProtKB/Swiss-Prot
    D3YTZ3, Q9DBR2
    UniProtKB/TrEMBL
    A1L311
    Related
    ENSMUSP00000051375.7, ENSMUST00000062883.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    70274981..70394566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156020.1 → XP_036011913.1  protein FAM13C isoform X2

  2. XM_030245285.2 → XP_030101145.1  protein FAM13C isoform X2

  3. XM_017314101.3 → XP_017169590.1  protein FAM13C isoform X1

    UniProtKB/TrEMBL
    A1L311, G3X9S1

  4. XM_036156022.1 → XP_036011915.1  protein FAM13C isoform X3

  5. XM_036156021.1 → XP_036011914.1  protein FAM13C isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DBR2.2 GenPept UniProtKB/Swiss-Prot:Q9DBR2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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