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9130008F23Rik RIKEN cDNA 9130008F23 gene [ Mus musculus (house mouse) ]

Gene ID: 71583, updated on 5-Mar-2024

Summary

Official Symbol
9130008F23Rikprovided by MGI
Official Full Name
RIKEN cDNA 9130008F23 geneprovided by MGI
Primary source
MGI:MGI:1918833
See related
Ensembl:ENSMUSG00000054951 AllianceGenome:MGI:1918833
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within blastocyst hatching. Is expressed in early conceptus. Orthologous to human C6orf141 (chromosome 6 open reading frame 141). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in bladder adult (RPKM 5.8), large intestine adult (RPKM 3.9) and 17 other tissues See more
Orthologs
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Genomic context

Location:
17 B2; 17 19.54 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (41186373..41191449, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (40875482..40880558, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene Rhesus blood group-associated A glycoprotein Neighboring gene STARR-seq mESC enhancer starr_42548 Neighboring gene STARR-seq mESC enhancer starr_42549 Neighboring gene cytochrome P450, family 2, subfamily ac, polypeptide 1, pseudogene Neighboring gene glycine-N-acyltransferase-like 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:41071423-41071532 Neighboring gene centromere protein Q Neighboring gene methylmalonyl-Coenzyme A mutase

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
uncharacterized protein C6orf141 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027834.3NP_082110.1  uncharacterized protein C6orf141 homolog

    See identical proteins and their annotated locations for NP_082110.1

    Status: VALIDATED

    Source sequence(s)
    AK018601, AK033670
    Consensus CDS
    CCDS50110.1
    UniProtKB/TrEMBL
    Q9D2Z6
    Related
    ENSMUSP00000069779.3, ENSMUST00000068258.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    41186373..41191449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)