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Tmem238l transmembrane protein 238 like [ Mus musculus (house mouse) ]

Gene ID: 71576, updated on 5-Mar-2024

Summary

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Official Symbol
Tmem238lprovided by MGI
Official Full Name
transmembrane protein 238 likeprovided by MGI
Primary source
MGI:MGI:1918826
See related
Ensembl:ENSMUSG00000085683 AllianceGenome:MGI:1918826
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9130409J20Rik
Summary
Is expressed in bladder; urinary system; and urothelium of bladder. Orthologous to human TMEM238L (transmembrane protein 238 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 84.1), small intestine adult (RPKM 45.2) and 5 other tissues See more
Orthologs
human all
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Genomic context

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Location:
11 B3; 11 40.59 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (66847368..66855842)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (66955092..66965016)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12298 Neighboring gene predicted gene, 29712 Neighboring gene STARR-seq mESC enhancer starr_29784 Neighboring gene phosphoinositide-interacting regulator of transient receptor potential channels Neighboring gene STARR-seq mESC enhancer starr_29786 Neighboring gene STARR-positive B cell enhancer ABC_E8414 Neighboring gene STARR-seq mESC enhancer starr_29788 Neighboring gene predicted gene 12299 Neighboring gene STARR-seq mESC enhancer starr_29789 Neighboring gene STARR-seq mESC enhancer starr_29791 Neighboring gene transmembrane protein 220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. Nelson PS, et al. Nucleic Acids Res, 2002 Jan 1. PMID 11752298, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
transmembrane protein 238-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001388429.1 → NP_001375358.1  transmembrane protein 238-like

    Status: VALIDATED

    Source sequence(s)
    AL645988
    UniProtKB/TrEMBL
    A0A1B0GRQ8, A0A1B0GS74
    Related
    ENSMUSP00000147820.2, ENSMUST00000211300.2
    Conserved Domains (1) summary
    pfam15125
    Location:13 → 76
    TMEM238; TMEM238 protein family

  2. NM_001388430.1 → NP_001375359.1  transmembrane protein 238-like

    Status: VALIDATED

    Source sequence(s)
    AL645988
    UniProtKB/TrEMBL
    A0A1B0GRQ8, A0A1B0GS74
    Related
    ENSMUSP00000147625.2, ENSMUST00000150220.2
    Conserved Domains (1) summary
    pfam15125
    Location:13 → 76
    TMEM238; TMEM238 protein family

RNA

  1. NR_130646.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL645988
    Related
    ENSMUST00000127166.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    66847368..66855842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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