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Fam217b family with sequence similarity 217, member B [ Mus musculus (house mouse) ]

Gene ID: 71532, updated on 5-Mar-2024

Summary

Official Symbol
Fam217bprovided by MGI
Official Full Name
family with sequence similarity 217, member Bprovided by MGI
Primary source
MGI:MGI:1918782
See related
Ensembl:ENSMUSG00000070476 AllianceGenome:MGI:1918782
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9030418K01Rik
Summary
Predicted to be located in cytosol and nucleoplasm. Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and hemolymphoid system gland. Orthologous to human FAM217B (family with sequence similarity 217 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cortex adult (RPKM 6.0), frontal lobe adult (RPKM 4.7) and 19 other tissues See more
Orthologs
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Genomic context

Location:
2 H4; 2 99.92 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (178055497..178066221)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (178413704..178424428)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 3 Neighboring gene synaptonemal complex protein 2 Neighboring gene GC-rich promoter binding protein 1 pseudogene Neighboring gene protein phosphatase 1, regulatory subunit 3D Neighboring gene predicted gene, 35532 Neighboring gene cadherin-like 26

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081289.1NP_001074758.1  protein FAM217B

    See identical proteins and their annotated locations for NP_001074758.1

    Status: PROVISIONAL

    Source sequence(s)
    AL772217
    Consensus CDS
    CCDS38372.1
    UniProtKB/TrEMBL
    A2AJW5
    Related
    ENSMUSP00000091805.5, ENSMUST00000094251.11
    Conserved Domains (1) summary
    pfam15344
    Location:103329
    FAM217; FAM217 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    178055497..178066221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239961.2XP_011238263.1  protein FAM217B isoform X1

    See identical proteins and their annotated locations for XP_011238263.1

    UniProtKB/TrEMBL
    A2AJW5
    Conserved Domains (1) summary
    pfam15344
    Location:103329
    FAM217; FAM217 family