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5430435K18Rik RIKEN cDNA 5430435K18 gene [ Mus musculus (house mouse) ]

Gene ID: 71357, updated on 8-Feb-2024

Summary

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Official Symbol
5430435K18Rikprovided by MGI
Official Full Name
RIKEN cDNA 5430435K18 geneprovided by MGI
Primary source
MGI:MGI:1918607
See related
AllianceGenome:MGI:1918607
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm42904
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5; 5 G3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (151176088..151183262)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (151252623..151259797)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 8675 Neighboring gene StAR related lipid transfer domain containing 13 Neighboring gene STARR-seq mESC enhancer starr_14970 Neighboring gene STARR-seq mESC enhancer starr_14971 Neighboring gene predicted gene, 52834 Neighboring gene chromobox protein homolog 3 pseudogene Neighboring gene RIKEN cDNA 1700028E10 gene Neighboring gene STARR-seq mESC enhancer starr_14974 Neighboring gene predicted gene 3704

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    151176088..151183262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_868755.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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