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Stamos signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 70957, updated on 8-Feb-2024

Summary

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Official Symbol
Stamosprovided by MGI
Official Full Name
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strandprovided by MGI
Primary source
MGI:MGI:1918207
See related
AllianceGenome:MGI:1918207
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4921530L18Rik
Expression
Biased expression in testis adult (RPKM 14.7), genital fat pad adult (RPKM 1.2) and 5 other tissues See more
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Genomic context

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Location:
2 A2; 2 10.36 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (14075144..14078745, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (14070333..14073934, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene STARR-seq mESC enhancer starr_03712 Neighboring gene STARR-seq mESC enhancer starr_03715 Neighboring gene STARR-positive B cell enhancer ABC_E3359 Neighboring gene STARR-positive B cell enhancer ABC_E10082 Neighboring gene STARR-positive B cell enhancer ABC_E7793 Neighboring gene STARR-seq mESC enhancer starr_03717 Neighboring gene STARR-seq mESC enhancer starr_03718 Neighboring gene STARR-seq mESC enhancer starr_03719 Neighboring gene STARR-seq mESC enhancer starr_03720 Neighboring gene STARR-seq mESC enhancer starr_03721 Neighboring gene 3-hydroxyacyl-CoA dehydratase 1 Neighboring gene STARR-seq mESC enhancer starr_03722 Neighboring gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 Neighboring gene STARR-seq mESC enhancer starr_03726 Neighboring gene transmembrane protein 236

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of novel markers of mouse fetal ovary development. Chen H, et al. PLoS One, 2012. PMID 22844512, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • Stam opposite strand transcript

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038162.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK014986, AL844560

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    14075144..14078745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases