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Poteg POTE ankyrin domain family, member G [ Mus musculus (house mouse) ]

Gene ID: 70952, updated on 3-Apr-2024

Summary

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Official Symbol
Potegprovided by MGI
Official Full Name
POTE ankyrin domain family, member Gprovided by MGI
Primary source
MGI:MGI:1918202
See related
Ensembl:ENSMUSG00000063932 Ensembl:ENSMUSG00000110333 AllianceGenome:MGI:1918202
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1698; Gsarp1; Gsarp2; 4921537P18Rik; 4930456F22Rik
Summary
Orthologous to several human genes including POTEB (POTE ankyrin domain family member B); POTEB2 (POTE ankyrin domain family member B2); and POTEC (POTE ankyrin domain family member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 12.4) See more
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Genomic context

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Location:
8 A2; 8 16.04 cM
Exon count:
69
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (27937662..28110476)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (27447634..27582717)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cholinergic receptor, nicotinic, alpha polypeptide 6 Neighboring gene predicted gene, 24410 Neighboring gene STARR-seq mESC enhancer starr_21038 Neighboring gene STARR-seq mESC enhancer starr_21039 Neighboring gene STARR-seq mESC enhancer starr_21040 Neighboring gene STARR-seq mESC enhancer starr_21041 Neighboring gene STARR-seq mESC enhancer starr_21042 Neighboring gene STARR-seq mESC enhancer starr_21044 Neighboring gene predicted gene, 24202 Neighboring gene STARR-seq mESC enhancer starr_21046 Neighboring gene predicted gene, 39153

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Two novel transcripts encoding two Ankyrin repeat containing proteins have preponderant expression during the mouse spermatogenesis. Wang F, et al. Mol Biol Rep, 2007 Dec. PMID 17171436
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • AC111034.1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
POTE ankyrin domain family member A
Names
gonad specific ankyrin repeat protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401513.1 → NP_001388442.1  POTE ankyrin domain family member A isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC111034, AC158566
    Related
    ENSMUSP00000147714.2, ENSMUST00000209669.2

  2. NM_026256.2 → NP_080532.1  POTE ankyrin domain family member A isoform 1

    See identical proteins and their annotated locations for NP_080532.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1, also known as Gsarp1) represents the shortest transcript and encodes the shortest isoform (1).
    Source sequence(s)
    AK015473
    UniProtKB/TrEMBL
    Q9D5D4, Q9D5M0
    Related
    ENSMUST00000211657.2
    Conserved Domains (4) summary
    cd00204
    Location:76 → 200
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:118 → 210
    Ank_2; Ankyrin repeats (3 copies)
    pfam13857
    Location:199 → 253
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:116 → 144
    ANK; ANK repeat [structural motif]

  3. NM_027618.1 → NP_081894.1  POTE ankyrin domain family member A isoform 2

    See identical proteins and their annotated locations for NP_081894.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2, also known as Gsarp2) differs in the 3' UTR and includes several additional exons in the 3' coding region, compared to variant 1. The resulting isoform (2) is longer and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC158566, AK015012
    Consensus CDS
    CCDS52535.1
    UniProtKB/TrEMBL
    A5H0M4, Q9CUQ9
    Related
    ENSMUSP00000080069.5, ENSMUST00000081321.5
    Conserved Domains (4) summary
    cd00204
    Location:76 → 200
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:118 → 210
    Ank_2; Ankyrin repeats (3 copies)
    pfam13857
    Location:199 → 253
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:116 → 144
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    27937662..28110476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242159.3 → XP_011240461.1  POTE ankyrin domain family member A isoform X1

    Conserved Domains (3) summary
    COG0666
    Location:89 → 281
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:116 → 144
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:85 → 176
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_006509192.4 → XP_006509255.1  POTE ankyrin domain family member A isoform X2

    UniProtKB/TrEMBL
    A0A1B0GS20
    Conserved Domains (3) summary
    COG0666
    Location:89 → 281
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:116 → 144
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:85 → 176
    Ank_2; Ankyrin repeats (3 copies)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001033467.1: Suppressed sequence

    Description
    NM_001033467.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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