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Garin2 golgi associated RAB2 interactor 2 [ Mus musculus (house mouse) ]

Gene ID: 70897, updated on 5-Mar-2024

Summary

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Official Symbol
Garin2provided by MGI
Official Full Name
golgi associated RAB2 interactor 2provided by MGI
Primary source
MGI:MGI:1918147
See related
Ensembl:ENSMUSG00000056987 AllianceGenome:MGI:1918147
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam71d; GARI-L2; 4921509E07Rik; 4930516C23Rik
Summary
Orthologous to human FAM71D (family with sequence similarity 71 member D). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 71.9) See more
Orthologs
human all
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Genomic context

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See Garin2 in Genome Data Viewer
Location:
12 C3; 12 35.51 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (78738257..78781290)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (78691484..78734519)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7151 Neighboring gene coiled-coil domain containing 196 Neighboring gene gephyrin Neighboring gene eukaryotic translation initiation factor 5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_32573 Neighboring gene STARR-seq mESC enhancer starr_32575 Neighboring gene STARR-positive B cell enhancer ABC_E10759 Neighboring gene protein associated with LIN7 1, MAGUK family member Neighboring gene STARR-seq mESC enhancer starr_32577 Neighboring gene STARR-seq mESC enhancer starr_32578 Neighboring gene ATPase, H+ transporting, lysosomal V1 subunit D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The expression characteristics of FAM71D and its association with sperm motility. Ma Q, et al. Hum Reprod, 2017 Nov 1. PMID 29025071
  2. Large scale screening for novel rab effectors reveals unexpected broad Rab binding specificity. Fukuda M, et al. Mol Cell Proteomics, 2008 Jun. PMID 18256213
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in flagellated sperm motility IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
located_in sperm midpiece IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 2
Names
Golgi associated RAB2 interactor protein 2
Golgi-associated Rab2B interactor-like 2
family with sequence similarity 71, member D
protein FAM71D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403949.1 → NP_001390878.1  Golgi-associated RAB2 interactor protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125057
    UniProtKB/TrEMBL
    Q80W24

  2. NM_001403951.1 → NP_001390880.1  Golgi-associated RAB2 interactor protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125057
    UniProtKB/TrEMBL
    Q80W24

  3. NM_001403957.1 → NP_001390886.1  Golgi-associated RAB2 interactor protein 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC125057

  4. NM_001403958.1 → NP_001390887.1  Golgi-associated RAB2 interactor protein 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC125057

  5. NM_001403959.1 → NP_001390888.1  Golgi-associated RAB2 interactor protein 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC125057

  6. NM_001403960.1 → NP_001390889.1  Golgi-associated RAB2 interactor protein 2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC125057

  7. NM_001403961.1 → NP_001390890.1  Golgi-associated RAB2 interactor protein 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC125057

  8. NM_001403962.1 → NP_001390891.1  Golgi-associated RAB2 interactor protein 2 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC125057

  9. NM_001403963.1 → NP_001390892.1  Golgi-associated RAB2 interactor protein 2 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC125057

  10. NM_027597.5 → NP_081873.2  Golgi-associated RAB2 interactor protein 2 isoform 2

    See identical proteins and their annotated locations for NP_081873.2

    Status: VALIDATED

    Source sequence(s)
    AC125057
    Consensus CDS
    CCDS88358.1
    UniProtKB/TrEMBL
    Q80W24
    Related
    ENSMUSP00000151845.2, ENSMUST00000219551.2
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  11. NM_029069.2 → NP_083345.1  Golgi-associated RAB2 interactor protein 2 isoform 1

    See identical proteins and their annotated locations for NP_083345.1

    Status: VALIDATED

    Source sequence(s)
    AC125057
    Consensus CDS
    CCDS49096.1
    UniProtKB/Swiss-Prot
    D3YV92
    Related
    ENSMUSP00000077119.5, ENSMUST00000077968.5
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

RNA

  1. NR_175786.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125057

  2. NR_175787.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125057

  3. NR_175788.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125057

  4. NR_175789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125057

  5. NR_175790.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125057

  6. NR_175791.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125057

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    78738257..78781290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157611.1 → XP_036013504.1  Golgi-associated RAB2 interactor protein 2 isoform X6

    Conserved Domains (1) summary
    pfam12480
    Location:18 → 85
    DUF3699; Protein of unknown function (DUF3699)

  2. XM_030246919.2 → XP_030102779.1  Golgi-associated RAB2 interactor protein 2 isoform X8

    Conserved Domains (1) summary
    pfam12480
    Location:20 → 85
    DUF3699; Protein of unknown function (DUF3699)

  3. XM_011244172.2 → XP_011242474.1  Golgi-associated RAB2 interactor protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011242474.1

    UniProtKB/Swiss-Prot
    D3YV92
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  4. XM_017315195.2 → XP_017170684.1  Golgi-associated RAB2 interactor protein 2 isoform X1

    UniProtKB/Swiss-Prot
    D3YV92
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  5. XM_017315197.2 → XP_017170686.1  Golgi-associated RAB2 interactor protein 2 isoform X2

    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  6. XM_011244173.2 → XP_011242475.1  Golgi-associated RAB2 interactor protein 2 isoform X1

    See identical proteins and their annotated locations for XP_011242475.1

    UniProtKB/Swiss-Prot
    D3YV92
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  7. XM_017315196.2 → XP_017170685.1  Golgi-associated RAB2 interactor protein 2 isoform X1

    UniProtKB/Swiss-Prot
    D3YV92
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  8. XM_006516227.3 → XP_006516290.1  Golgi-associated RAB2 interactor protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006516290.1

    UniProtKB/Swiss-Prot
    D3YV92
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

  9. XM_017315199.2 → XP_017170688.1  Golgi-associated RAB2 interactor protein 2 isoform X4

    Conserved Domains (1) summary
    pfam12480
    Location:114 → 184
    DUF3699; Protein of unknown function (DUF3699)

RNA

  1. XR_003950085.2 RNA Sequence

  2. XR_001780488.2 RNA Sequence

  3. XR_004937543.1 RNA Sequence

  4. XR_003950084.2 RNA Sequence

  5. XR_001780487.3 RNA Sequence

  6. XR_003950080.2 RNA Sequence

  7. XR_001780485.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3YV92.1 GenPept UniProtKB/Swiss-Prot:D3YV92

Gene LinkOut

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