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Ccdc81 coiled-coil domain containing 81 [ Mus musculus (house mouse) ]

Gene ID: 70884, updated on 5-Mar-2024

Summary

Official Symbol
Ccdc81provided by MGI
Official Full Name
coiled-coil domain containing 81provided by MGI
Primary source
MGI:MGI:1918134
See related
Ensembl:ENSMUSG00000039391 AllianceGenome:MGI:1918134
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4921513D09Rik
Summary
Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in centrosome. Is expressed in lung. Orthologous to human CCDC81 (coiled-coil domain containing 81). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 25.3) See more
Orthologs
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Genomic context

See Ccdc81 in Genome Data Viewer
Location:
7 D3; 7 50.38 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (89515356..89552837, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (89866148..89903629, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53381 Neighboring gene malic enzyme 3, NADP(+)-dependent, mitochondrial Neighboring gene STARR-seq mESC enhancer starr_19494 Neighboring gene predicted gene 15744 Neighboring gene STARR-seq mESC enhancer starr_19496 Neighboring gene STARR-positive B cell enhancer ABC_E2241 Neighboring gene heat shock protein nuclear import factor Neighboring gene STARR-seq mESC enhancer starr_19498 Neighboring gene STARR-seq mESC enhancer starr_19499 Neighboring gene STARR-seq mESC enhancer starr_19500 Neighboring gene STARR-positive B cell enhancer ABC_E4947 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:97129229-97129338 Neighboring gene Eed upstream regulatory region Neighboring gene embryonic ectoderm development

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in centrosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 81

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162979.1NP_001156451.1  coiled-coil domain-containing protein 81

    See identical proteins and their annotated locations for NP_001156451.1

    Status: VALIDATED

    Source sequence(s)
    AC165077, AK014876, AV255663
    Consensus CDS
    CCDS52306.1
    UniProtKB/Swiss-Prot
    A1L0U4, Q9D5W4
    UniProtKB/TrEMBL
    A7MCT4
    Related
    ENSMUSP00000044087.6, ENSMUST00000041195.6
    Conserved Domains (1) summary
    pfam14908
    Location:29158
    DUF4496; Domain of unknown function (DUF4496)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    89515356..89552837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)