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5730455P16Rik RIKEN cDNA 5730455P16 gene [ Mus musculus (house mouse) ]

Gene ID: 70591, updated on 5-Mar-2024

Summary

Official Symbol
5730455P16Rikprovided by MGI
Official Full Name
RIKEN cDNA 5730455P16 geneprovided by MGI
Primary source
MGI:MGI:1917841
See related
Ensembl:ENSMUSG00000057181 AllianceGenome:MGI:1917841
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in intracellular protein transport and vesicle tethering to Golgi. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Orthologous to human C17orf75 (chromosome 17 open reading frame 75). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cerebellum adult (RPKM 7.3), frontal lobe adult (RPKM 6.4) and 25 other tissues See more
Orthologs
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Genomic context

Location:
11 B5; 11 47.8 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (80251318..80268860, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (80360492..80378048, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ras homolog family member T1 Neighboring gene STARR-seq mESC enhancer starr_30145 Neighboring gene STARR-positive B cell enhancer mm9_chr11:80116169-80116470 Neighboring gene rhomboid like 3 Neighboring gene STARR-positive B cell enhancer ABC_E7026 Neighboring gene STARR-seq mESC enhancer starr_30146 Neighboring gene zinc finger protein 207 Neighboring gene STARR-seq mESC enhancer starr_30149 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in intracellular protein transport ISO
Inferred from Sequence Orthology
more info
 
involved_in vesicle tethering to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in vesicle tethering to Golgi ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027472.3NP_081748.1  protein Njmu-R1

    See identical proteins and their annotated locations for NP_081748.1

    Status: VALIDATED

    Source sequence(s)
    AK078548, AK153246, AL591146
    Consensus CDS
    CCDS25132.1
    UniProtKB/Swiss-Prot
    Q7TMQ9, Q9CYI0
    UniProtKB/TrEMBL
    J3KMQ6
    Related
    ENSMUSP00000099515.5, ENSMUST00000103225.11
    Conserved Domains (1) summary
    pfam15053
    Location:46390
    Njmu-R1; Mjmu-R1-like protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    80251318..80268860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006534198.4XP_006534261.1  protein Njmu-R1 isoform X1

    See identical proteins and their annotated locations for XP_006534261.1

    UniProtKB/TrEMBL
    Q3TUY5
    Conserved Domains (1) summary
    pfam15053
    Location:1249
    Njmu-R1; Mjmu-R1-like protein family