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2610318N02Rik RIKEN cDNA 2610318N02 gene [ Mus musculus (house mouse) ]

Gene ID: 70458, updated on 30-Apr-2024

Summary

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Official Symbol
2610318N02Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610318N02 geneprovided by MGI
Primary source
MGI:MGI:1917708
See related
Ensembl:ENSMUSG00000049916 AllianceGenome:MGI:1917708
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 698.7) See more
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Genomic context

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Location:
16 A3; 16 10.61 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (16931262..16943080, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (17113398..17125202, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9426 Neighboring gene mitogen-activated protein kinase 1 Neighboring gene yippee like 1 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 2 Neighboring gene STARR-positive B cell enhancer ABC_E9927 Neighboring gene STARR-positive B cell enhancer ABC_E7429 Neighboring gene STARR-positive B cell enhancer ABC_E214 Neighboring gene microRNA 130b Neighboring gene microRNA 301b Neighboring gene stromal cell-derived factor 2-like 1 Neighboring gene Rps20 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Harrison SM, et al. Development, 1995 Aug. PMID 7671812
  2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC70458

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358255.1 → NP_001345184.1  uncharacterized protein LOC70458

    Status: VALIDATED

    Source sequence(s)
    AK146836, BC039993, BY710145
    Consensus CDS
    CCDS37269.1
    UniProtKB/TrEMBL
    Q80VT5
    Related
    ENSMUSP00000156313.2, ENSMUST00000231681.2
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)

  2. NM_183287.3 → NP_899110.2  uncharacterized protein LOC70458

    See identical proteins and their annotated locations for NP_899110.2

    Status: VALIDATED

    Source sequence(s)
    BC039993, BY710145
    Consensus CDS
    CCDS37269.1
    UniProtKB/TrEMBL
    Q80VT5
    Related
    ENSMUSP00000091026.7, ENSMUST00000093336.8
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    16931262..16943080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522540.2 → XP_006522603.1  uncharacterized protein LOC70458 isoform X1

    See identical proteins and their annotated locations for XP_006522603.1

    UniProtKB/TrEMBL
    Q80VT5
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)

  2. XM_030249273.1 → XP_030105133.1  uncharacterized protein LOC70458 isoform X2

    UniProtKB/TrEMBL
    A0A338P7G0
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)

  3. XM_006522539.5 → XP_006522602.1  uncharacterized protein LOC70458 isoform X1

    See identical proteins and their annotated locations for XP_006522602.1

    UniProtKB/TrEMBL
    Q80VT5
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)

  4. XM_006522537.3 → XP_006522600.1  uncharacterized protein LOC70458 isoform X1

    See identical proteins and their annotated locations for XP_006522600.1

    UniProtKB/TrEMBL
    Q80VT5
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)

  5. XM_006522541.5 → XP_006522604.1  uncharacterized protein LOC70458 isoform X2

    UniProtKB/TrEMBL
    A0A338P7G0
    Related
    ENSMUSP00000156373.2, ENSMUST00000231558.2
    Conserved Domains (1) summary
    pfam07759
    Location:20 → 66
    DUF1615; Protein of unknown function (DUF1615)
Nucleotide Protein Strain
Heading Accession and Version

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