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Lysmd2 LysM, putative peptidoglycan-binding, domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 70082, updated on 5-Mar-2024

Summary

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Official Symbol
Lysmd2provided by MGI
Official Full Name
LysM, putative peptidoglycan-binding, domain containing 2provided by MGI
Primary source
MGI:MGI:1917332
See related
Ensembl:ENSMUSG00000032184 AllianceGenome:MGI:1917332
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210402C18Rik
Summary
Is expressed in bladder and glans of male genital tubercle. Orthologous to human LYSMD2 (LysM domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in ovary adult (RPKM 15.0), lung adult (RPKM 15.0) and 23 other tissues See more
Orthologs
human all
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Genomic context

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Location:
9 D; 9 42.32 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (75532403..75545055)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (75625121..75637773)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene tropomodulin 3 Neighboring gene STARR-positive B cell enhancer mm9_chr9:75407347-75407647 Neighboring gene STARR-positive B cell enhancer mm9_chr9:75429888-75430189 Neighboring gene tropomodulin 2 Neighboring gene STARR-positive B cell enhancer mm9_chr9:75478519-75478819 Neighboring gene secretogranin III Neighboring gene STARR-seq mESC enhancer starr_24672 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Reevaluation of the Role of Extracellular Signal-Regulated Kinase 3 in Perinatal Survival and Postnatal Growth Using New Genetically Engineered Mouse Models. Soulez M, et al. Mol Cell Biol, 2019 Mar 15. PMID 30642949, Free PMC Article
  2. Diversification of stem cell molecular repertoire by alternative splicing. Pritsker M, et al. Proc Natl Acad Sci U S A, 2005 Oct 4. PMID 16183747, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
lysM and putative peptidoglycan-binding domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027309.2 → NP_081585.2  lysM and putative peptidoglycan-binding domain-containing protein 2

    See identical proteins and their annotated locations for NP_081585.2

    Status: VALIDATED

    Source sequence(s)
    AC123832, DT905233
    Consensus CDS
    CCDS40693.1
    UniProtKB/Swiss-Prot
    Q80ZR2, Q9D7V2
    UniProtKB/TrEMBL
    G3X915
    Related
    ENSMUSP00000034702.5, ENSMUST00000034702.6
    Conserved Domains (2) summary
    cd00118
    Location:71 → 115
    LysM; Lysine Motif is a small domain involved in binding peptidoglycan
    COG1388
    Location:53 → 122
    LysM; LysM repeat [Cell wall/membrane/envelope biogenesis]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    75532403..75545055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511431.2 → XP_006511494.1  lysM and putative peptidoglycan-binding domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006511494.1

    UniProtKB/Swiss-Prot
    Q9D7V2

RNA

  1. XR_003948002.1 RNA Sequence

  2. XR_001779008.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D7V2.2 GenPept UniProtKB/Swiss-Prot:Q9D7V2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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