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2010003K11Rik RIKEN cDNA 2010003K11 gene [ Mus musculus (house mouse) ]

Gene ID: 69861, updated on 5-Mar-2024

Summary

Official Symbol
2010003K11Rikprovided by MGI
Official Full Name
RIKEN cDNA 2010003K11 geneprovided by MGI
Primary source
MGI:MGI:1917111
See related
Ensembl:ENSMUSG00000042041 AllianceGenome:MGI:1917111
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Faci; Nrnp1
Summary
Orthologous to human C11orf86 (chromosome 11 open reading frame 86). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 60.8), small intestine adult (RPKM 42.2) and 7 other tissues See more
Orthologs
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Genomic context

Location:
19 A; 19 4.07 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (4546816..4548611, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (4496788..4498583, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45348 Neighboring gene RIKEN cDNA A930001C03 gene Neighboring gene STARR-seq mESC enhancer starr_45349 Neighboring gene ras homolog family member D Neighboring gene synaptotagmin XII Neighboring gene STARR-positive B cell enhancer ABC_E778 Neighboring gene pyruvate carboxylase Neighboring gene STARR-seq mESC enhancer starr_45350 Neighboring gene leucine rich repeat and fibronectin type III domain containing 4 Neighboring gene microRNA 6986 Neighboring gene Ras converting CAAX endopeptidase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C11orf86 homolog
Names
nutritionally regulated nuclear protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027237.2NP_081513.1  uncharacterized protein C11orf86 homolog

    See identical proteins and their annotated locations for NP_081513.1

    Status: VALIDATED

    Source sequence(s)
    AC124347
    Consensus CDS
    CCDS29429.1
    UniProtKB/Swiss-Prot
    Q8VC23, Q9D8F7
    UniProtKB/TrEMBL
    A0A678XUL2
    Related
    ENSMUSP00000036729.7, ENSMUST00000048482.8
    Conserved Domains (1) summary
    pfam15464
    Location:1115
    DUF4633; Domain of unknown function (DUF4633)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    4546816..4548611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)