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1500009L16Rik RIKEN cDNA 1500009L16 gene [ Mus musculus (house mouse) ]

Gene ID: 69784, updated on 5-Mar-2024

Summary

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Official Symbol
1500009L16Rikprovided by MGI
Official Full Name
RIKEN cDNA 1500009L16 geneprovided by MGI
Primary source
MGI:MGI:1917034
See related
Ensembl:ENSMUSG00000087651 AllianceGenome:MGI:1917034
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
OCC-1; 2700050C19Rik
Summary
Orthologous to human C12orf75 (chromosome 12 open reading frame 75). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in placenta adult (RPKM 17.7), CNS E18 (RPKM 12.6) and 15 other tissues See more
Orthologs
human all
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Genomic context

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See 1500009L16Rik in Genome Data Viewer
Location:
10 C1; 10 41.3 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (83558560..83598626)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (83722693..83762762)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 4 Neighboring gene adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 Neighboring gene STARR-seq mESC enhancer starr_27397 Neighboring gene STARR-seq mESC enhancer starr_27398 Neighboring gene STARR-seq mESC enhancer starr_27399 Neighboring gene STARR-seq mESC enhancer starr_27401 Neighboring gene STARR-seq mESC enhancer starr_27402 Neighboring gene STARR-seq mESC enhancer starr_27403 Neighboring gene STARR-seq mESC enhancer starr_27404 Neighboring gene predicted gene, 33919 Neighboring gene predicted gene, 33980

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
overexpressed in colon carcinoma 1 protein homolog
Names
Putative overexpressed in colon carcinoma 1 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145198.1 → NP_001138670.1  overexpressed in colon carcinoma 1 protein homolog

    See identical proteins and their annotated locations for NP_001138670.1

    Status: VALIDATED

    Source sequence(s)
    BC048550, CD776925, CO044092
    Consensus CDS
    CCDS48656.1
    UniProtKB/Swiss-Prot
    P0C913
    Related
    ENSMUSP00000129542.2, ENSMUST00000150459.3
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    83558560..83598626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011243557.4 → XP_011241859.1  overexpressed in colon carcinoma 1 protein homolog isoform X1

    Conserved Domains (1) summary
    pfam15506
    Location:92 → 134
    OCC1; OCC1 family

  2. XM_011243558.4 → XP_011241860.1  overexpressed in colon carcinoma 1 protein homolog isoform X2

    Conserved Domains (1) summary
    pfam15506
    Location:92 → 134
    OCC1; OCC1 family

  3. XM_006514060.5 → XP_006514123.1  overexpressed in colon carcinoma 1 protein homolog isoform X3

    Related
    ENSMUSP00000151432.2, ENSMUST00000218623.2
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0C913.1 GenPept UniProtKB/Swiss-Prot:P0C913

Gene LinkOut

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