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2310061I04Rik RIKEN cDNA 2310061I04 gene [ Mus musculus (house mouse) ]

Gene ID: 69662, updated on 5-Mar-2024

Summary

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Official Symbol
2310061I04Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310061I04 geneprovided by MGI
Primary source
MGI:MGI:1916912
See related
Ensembl:ENSMUSG00000050705 AllianceGenome:MGI:1916912
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Located in mitochondrion. Is expressed in several structures, including adrenal gland; gonad; liver; lung; and spleen. Orthologous to human C6orf136 (chromosome 6 open reading frame 136). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in duodenum adult (RPKM 59.0), testis adult (RPKM 36.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
17 B1; 17 18.75 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (36203569..36208270, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35892677..35897378, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42480 Neighboring gene protein phosphatase 1, regulatory subunit 18 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:36016615-36016802 Neighboring gene DEAH-box helicase 16 Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene STARR-positive B cell enhancer ABC_E10949 Neighboring gene predicted gene 16279 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene STARR-seq mESC enhancer starr_42481

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global gene expression analysis in fetal mouse ovaries with and without meiosis and comparison of selected genes with meiosis in the testis. Olesen C, et al. Cell Tissue Res, 2007 Apr. PMID 17431699
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC117734

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein C6orf136 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033630.1 → NP_001028802.1  uncharacterized protein C6orf136 homolog

    Status: VALIDATED

    Source sequence(s)
    BQ043979, BQ444983, CA459080
    Consensus CDS
    CCDS50095.1
    UniProtKB/TrEMBL
    B8JJ69, Q3TA61
    Related
    ENSMUSP00000116278.2, ENSMUST00000148721.8
    Conserved Domains (1) summary
    pfam10184
    Location:149 → 274
    DUF2358; Uncharacterized conserved protein (DUF2358)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    36203569..36208270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006524877.2 → XP_006524940.1  uncharacterized protein C6orf136 homolog isoform X2

    See identical proteins and their annotated locations for XP_006524940.1

    UniProtKB/TrEMBL
    A0PJN6, B8JJ66
    Related
    ENSMUSP00000114151.2, ENSMUST00000148482.8
    Conserved Domains (1) summary
    pfam10184
    Location:66 → 191
    DUF2358; Uncharacterized conserved protein (DUF2358)

  2. XM_006524875.4 → XP_006524938.1  uncharacterized protein C6orf136 homolog isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:114 → 240
    PHA03247; large tegument protein UL36; Provisional
    pfam10184
    Location:242 → 367
    DUF2358; Uncharacterized conserved protein (DUF2358)
Nucleotide Protein Strain
Heading Accession and Version

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