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Ripor3 RIPOR family member 3 [ Mus musculus (house mouse) ]

Gene ID: 69553, updated on 5-Mar-2024

Summary

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Official Symbol
Ripor3provided by MGI
Official Full Name
RIPOR family member 3provided by MGI
Primary source
MGI:MGI:1916803
See related
Ensembl:ENSMUSG00000074577 AllianceGenome:MGI:1916803
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm124; Fam65c; 2310033K02Rik
Summary
Orthologous to human RIPOR3 (RIPOR family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 4.0), kidney adult (RPKM 2.6) and 21 other tissues See more
Orthologs
human all
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Genomic context

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Location:
2 H3; 2 88.07 cM
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (167822081..167892809, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (167980161..168050889, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 33033 Neighboring gene predicted gene, 32928 Neighboring gene STARR-positive B cell enhancer ABC_E4524 Neighboring gene STARR-positive B cell enhancer ABC_E2062 Neighboring gene STARR-seq mESC enhancer starr_06447 Neighboring gene protein tyrosine phosphatase, non-receptor type 1 Neighboring gene STARR-positive B cell enhancer ABC_E4525 Neighboring gene predicted gene, 33108 Neighboring gene predicted gene, 39990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
RIPOR family member 3
Names
family with sequence similarity 65, member C
protein FAM65C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080708.3 → NP_001074177.1  RIPOR family member 3

    See identical proteins and their annotated locations for NP_001074177.1

    Status: VALIDATED

    Source sequence(s)
    AK158217, AL928998, BC130272
    Consensus CDS
    CCDS38341.1
    UniProtKB/Swiss-Prot
    A1L3T7
    Related
    ENSMUSP00000096672.3, ENSMUST00000099073.3
    Conserved Domains (1) summary
    pfam15903
    Location:19 → 363
    PL48; Filopodia upregulated, FAM65

RNA

  1. NR_156115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL831766, AL928998
    Related
    ENSMUST00000123782.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    167822081..167892809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500139.3 → XP_006500202.1  RIPOR family member 3 isoform X1

    See identical proteins and their annotated locations for XP_006500202.1

    UniProtKB/Swiss-Prot
    A1L3T7
    Conserved Domains (1) summary
    pfam15903
    Location:19 → 363
    PL48; Filopodia upregulated, FAM65

  2. XM_036162538.1 → XP_036018431.1  RIPOR family member 3 isoform X3

    Conserved Domains (1) summary
    pfam15903
    Location:1 → 205
    PL48; Filopodia upregulated, FAM65

  3. XM_006500137.1 → XP_006500200.1  RIPOR family member 3 isoform X1

    See identical proteins and their annotated locations for XP_006500200.1

    UniProtKB/Swiss-Prot
    A1L3T7
    Conserved Domains (1) summary
    pfam15903
    Location:19 → 363
    PL48; Filopodia upregulated, FAM65

  4. XM_006500138.1 → XP_006500201.1  RIPOR family member 3 isoform X1

    See identical proteins and their annotated locations for XP_006500201.1

    UniProtKB/Swiss-Prot
    A1L3T7
    Conserved Domains (1) summary
    pfam15903
    Location:19 → 363
    PL48; Filopodia upregulated, FAM65

  5. XM_006500140.3 → XP_006500203.1  RIPOR family member 3 isoform X2

    Conserved Domains (1) summary
    pfam15903
    Location:8 → 337
    PL48; Filopodia upregulated, FAM65

  6. XM_006500141.1 → XP_006500204.1  RIPOR family member 3 isoform X4

    Conserved Domains (1) summary
    pfam15903
    Location:19 → 363
    PL48; Filopodia upregulated, FAM65

RNA

  1. XR_866340.1 RNA Sequence

  2. XR_866339.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L3T7.1 GenPept UniProtKB/Swiss-Prot:A1L3T7

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