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2310015A10Rik RIKEN cDNA 2310015A10 gene [ Mus musculus (house mouse) ]

Gene ID: 69548, updated on 8-Feb-2024

Summary

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Official Symbol
2310015A10Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310015A10 geneprovided by MGI
Primary source
MGI:MGI:1916798
See related
AllianceGenome:MGI:1916798
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5330419I17Rik
Expression
Ubiquitous expression in bladder adult (RPKM 5.1), spleen adult (RPKM 4.5) and 28 other tissues See more
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Genomic context

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Location:
12 C3; 12 36.46 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (80167320..80179618, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (80120546..80132844, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_32612 Neighboring gene predicted gene, 36660 Neighboring gene predicted gene, 36834 Neighboring gene VISTA enhancer mm1469 Neighboring gene STARR-positive B cell enhancer ABC_E7153 Neighboring gene STARR-positive B cell enhancer mm9_chr12:81209847-81210148 Neighboring gene STARR-seq mESC enhancer starr_32615 Neighboring gene STARR-positive B cell enhancer ABC_E8491 Neighboring gene STARR-seq mESC enhancer starr_32616 Neighboring gene zinc finger protein 36, C3H type-like 1 Neighboring gene STARR-positive B cell enhancer ABC_E4031 Neighboring gene STARR-positive B cell enhancer ABC_E7154 Neighboring gene STARR-positive B cell enhancer ABC_E7155 Neighboring gene actinin, alpha 1 Neighboring gene STARR-positive B cell enhancer ABC_E11516 Neighboring gene predicted gene, 29952

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033514.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108401, AK053779, AK160272, CO044169

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    80167320..80179618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases