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Dydc1 DPY30 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 69496, updated on 11-Apr-2024

Summary

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Official Symbol
Dydc1provided by MGI
Official Full Name
DPY30 domain containing 1provided by MGI
Primary source
MGI:MGI:1916746
See related
Ensembl:ENSMUSG00000021790 AllianceGenome:MGI:1916746
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700029M23Rik
Summary
Predicted to be involved in histone H3-K4 methylation and subtelomeric heterochromatin assembly. Predicted to be part of Set1C/COMPASS complex. Orthologous to human DYDC1 (DPY30 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 10.0) See more
Orthologs
human all
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Genomic context

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Location:
14 B; 14 22.36 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (40794834..40814154)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (41072880..41092197)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8554 Neighboring gene predicted gene, 31839 Neighboring gene STARR-positive B cell enhancer ABC_E5429 Neighboring gene peroxiredoxin like 2A Neighboring gene STARR-seq mESC enhancer starr_36477 Neighboring gene DPY30 domain containing 2 Neighboring gene methionine adenosyltransferase 1A Neighboring gene surfactant associated protein A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC58375

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in epithelial cilium movement involved in extracellular fluid movement IC
Inferred by Curator
more info
 PubMed 
involved_in flagellated sperm motility IC
Inferred by Curator
more info
 PubMed 
involved_in mating IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in 9+2 motile cilium IC
Inferred by Curator
more info
 PubMed 
part_of Set1C/COMPASS complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
part_of radial spoke IDA
Inferred from Direct Assay
more info
 PubMed 
located_in sperm flagellum IC
Inferred by Curator
more info
 PubMed 

General protein information

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Preferred Names
DPY30 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418554.1 → NP_001405483.1  DPY30 domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC154597
    UniProtKB/Swiss-Prot
    G3X8U6, Q810Q6, Q9D9T0

  2. NM_027094.2 → NP_081370.1  DPY30 domain-containing protein 1

    See identical proteins and their annotated locations for NP_081370.1

    Status: VALIDATED

    Source sequence(s)
    AC154597
    Consensus CDS
    CCDS49451.1
    UniProtKB/Swiss-Prot
    G3X8U6, Q810Q6, Q9D9T0
    Related
    ENSMUSP00000139412.2, ENSMUST00000189865.7
    Conserved Domains (2) summary
    pfam05186
    Location:1 → 42
    Dpy-30; Dpy-30 motif
    pfam06936
    Location:45 → 129
    Selenoprotein_S; Selenoprotein S (SelS)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    40794834..40814154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017316179.1 → XP_017171668.1  DPY30 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    E0CXB0
    Related
    ENSMUSP00000124785.2, ENSMUST00000161837.2
    Conserved Domains (2) summary
    pfam05186
    Location:1 → 42
    Dpy-30; Dpy-30 motif
    pfam06936
    Location:45 → 129
    Selenoprotein_S; Selenoprotein S (SelS)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9T0.2 GenPept UniProtKB/Swiss-Prot:Q9D9T0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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