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Cfap96 cilia and flagella associated protein 96 [ Mus musculus (house mouse) ]

Gene ID: 69479, updated on 5-Mar-2024

Summary

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Official Symbol
Cfap96provided by MGI
Official Full Name
cilia and flagella associated protein 96provided by MGI
Primary source
MGI:MGI:1916729
See related
Ensembl:ENSMUSG00000071103 AllianceGenome:MGI:1916729
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700029J07Rik
Summary
Predicted to be located in 9+0 non-motile cilium and cytoplasmic microtubule. Predicted to be active in centrosome. Orthologous to human C4orf47 (chromosome 4 open reading frame 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 7.3), bladder adult (RPKM 2.5) and 14 other tissues See more
Orthologs
human all
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Genomic context

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Location:
8 B1.1; 8 25.94 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (46387980..46428290, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (45939196..45975488, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 25309 Neighboring gene PDZ and LIM domain 3 Neighboring gene STARR-seq mESC enhancer starr_21375 Neighboring gene STARR-positive B cell enhancer mm9_chr8:47020100-47020401 Neighboring gene coiled-coil domain containing 110 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:47060555-47060664 Neighboring gene UFM1-specific peptidase 2 Neighboring gene STARR-positive B cell enhancer ABC_E10496 Neighboring gene ankyrin repeat domain 37 Neighboring gene Lrp2 binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC130198

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in 9+0 non-motile cilium ISO
Inferred from Sequence Orthology
more info
  
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in centrosome ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cilia-and flagella-associated protein 96
Names
UPF0602 protein C4orf47 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033148.3 → NP_001028320.1  cilia-and flagella-associated protein 96

    See identical proteins and their annotated locations for NP_001028320.1

    Status: VALIDATED

    Source sequence(s)
    AC114558
    Consensus CDS
    CCDS22283.1
    UniProtKB/Swiss-Prot
    Q3U1D9
    Related
    ENSMUSP00000092961.2, ENSMUST00000095323.8
    Conserved Domains (1) summary
    pfam15239
    Location:10 → 294
    DUF4586; Domain of unknown function (DUF4586)

  2. NM_001359113.1 → NP_001346042.1  cilia-and flagella-associated protein 96

    Status: VALIDATED

    Source sequence(s)
    AC114558
    Consensus CDS
    CCDS22283.1
    UniProtKB/Swiss-Prot
    Q3U1D9
    Related
    ENSMUSP00000096383.3, ENSMUST00000098786.3
    Conserved Domains (1) summary
    pfam15239
    Location:10 → 294
    DUF4586; Domain of unknown function (DUF4586)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    46387980..46428290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004934873.1 RNA Sequence

  2. XR_378912.5 RNA Sequence

  3. XR_003947334.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3U1D9.1 GenPept UniProtKB/Swiss-Prot:Q3U1D9

Gene LinkOut

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