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Plac8l1 PLAC8-like 1 [ Mus musculus (house mouse) ]

Gene ID: 69401, updated on 5-Mar-2024

Summary

Official Symbol
Plac8l1provided by MGI
Official Full Name
PLAC8-like 1provided by MGI
Primary source
MGI:MGI:1916651
See related
Ensembl:ENSMUSG00000059455 AllianceGenome:MGI:1916651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700009N18Rik; 1700015M15Rik
Summary
Orthologous to human PLAC8L1 (PLAC8 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 45.6) See more
Orthologs
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Genomic context

Location:
18 B3; 18 22.35 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42311740..42329774, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42178675..42196709, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene SH3 domain containing ring finger 2 Neighboring gene STARR-seq mESC enhancer starr_44432 Neighboring gene cystatin domain containing 7 Neighboring gene predicted gene, 18086 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene STARR-seq mESC enhancer starr_44434 Neighboring gene ribosomal protein S19, pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027072.1NP_081348.1  PLAC8-like protein 1

    See identical proteins and their annotated locations for NP_081348.1

    Status: VALIDATED

    Source sequence(s)
    AK005800, AK006002, AV254807, AV265480
    Consensus CDS
    CCDS50266.1
    UniProtKB/Swiss-Prot
    Q08EJ0, Q9DAB1
    Related
    ENSMUSP00000080111.3, ENSMUST00000081374.4
    Conserved Domains (1) summary
    TIGR01571
    Location:70158
    A_thal_Cys_rich; uncharacterized Cys-rich domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    42311740..42329774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)