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1700025G04Rik RIKEN cDNA 1700025G04 gene [ Mus musculus (house mouse) ]

Gene ID: 69399, updated on 5-Mar-2024

Summary

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Official Symbol
1700025G04Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700025G04 geneprovided by MGI
Primary source
MGI:MGI:1916649
See related
Ensembl:ENSMUSG00000032666 AllianceGenome:MGI:1916649
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610510E02Rik; 2900042O04Rik
Summary
Is expressed in several structures, including adrenal gland; gut; nervous system; sensory organ; and sternum. Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 7.1), cerebellum adult (RPKM 6.4) and 25 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 G2; 1 64.43 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (151760275..151967941, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (151884524..152091121, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2565 Neighboring gene STARR-positive B cell enhancer ABC_E7757 Neighboring gene STARR-positive B cell enhancer ABC_E5818 Neighboring gene ER degradation enhancer, mannosidase alpha-like 3 Neighboring gene STARR-positive B cell enhancer mm9_chr1:153670267-153670567 Neighboring gene STARR-seq mESC enhancer starr_02632 Neighboring gene predicted gene, 53604 Neighboring gene U4 spliceosomal RNA Neighboring gene STARR-seq mESC enhancer starr_02636 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene predicted gene, 53608 Neighboring gene predicted gene, 36920

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations. Munton RP, et al. Mol Cell Proteomics, 2007 Feb. PMID 17114649
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC14005

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf21 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_197990.3 → NP_932107.1  uncharacterized protein C1orf21 homolog

    See identical proteins and their annotated locations for NP_932107.1

    Status: VALIDATED

    Source sequence(s)
    AC166332, AI552192, AK148738, BB840268, CJ177750, CJ253786
    Consensus CDS
    CCDS35737.1
    UniProtKB/Swiss-Prot
    Q8K207
    UniProtKB/TrEMBL
    Q3TJL3
    Related
    ENSMUSP00000036406.8, ENSMUST00000044581.14
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 118
    DUF4612; Domain of unknown function (DUF4612)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    151760275..151967941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242805.2 → XP_030098665.1  uncharacterized protein C1orf21 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q8K207
    UniProtKB/TrEMBL
    Q3TJL3
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 118
    DUF4612; Domain of unknown function (DUF4612)

  2. XM_011248069.4 → XP_011246371.1  uncharacterized protein C1orf21 homolog isoform X1

    See identical proteins and their annotated locations for XP_011246371.1

    UniProtKB/Swiss-Prot
    Q8K207
    UniProtKB/TrEMBL
    Q3TJL3
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 118
    DUF4612; Domain of unknown function (DUF4612)

  3. XM_036153473.1 → XP_036009366.1  uncharacterized protein C1orf21 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q8K207
    UniProtKB/TrEMBL
    Q3TJL3
    Conserved Domains (1) summary
    pfam15389
    Location:2 → 118
    DUF4612; Domain of unknown function (DUF4612)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K207.1 GenPept UniProtKB/Swiss-Prot:Q8K207

Gene LinkOut

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