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Ms4a20 membrane-spanning 4-domains, subfamily A, member 20 [ Mus musculus (house mouse) ]

Gene ID: 69369, updated on 8-Feb-2024

Summary

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Official Symbol
Ms4a20provided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 20provided by MGI
Primary source
MGI:MGI:1916619
See related
Ensembl:ENSMUSG00000024729 AllianceGenome:MGI:1916619
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700017D01Rik
Expression
Restricted expression toward testis adult (RPKM 100.8) See more
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Genomic context

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See Ms4a20 in Genome Data Viewer
Location:
19 A; 19 7.68 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11074178..11108253, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11096814..11130889, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene membrane-spanning 4-domains, subfamily A, member 8A Neighboring gene STARR-seq mESC enhancer starr_45564 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 pseudogene Neighboring gene NS1-associated protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45565 Neighboring gene membrane-spanning 4-domains, subfamily A, member 19 Neighboring gene membrane-spanning 4-domains, subfamily A, member 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC69369

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027058.1 → NP_081334.1  uncharacterized protein LOC69369

    See identical proteins and their annotated locations for NP_081334.1

    Status: VALIDATED

    Source sequence(s)
    AK006056, BU938748
    Consensus CDS
    CCDS50393.1
    UniProtKB/TrEMBL
    G5E851
    Related
    ENSMUSP00000025635.7, ENSMUST00000025635.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11074178..11108253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251070.1 → XP_030106930.1  uncharacterized protein LOC69369 isoform X1

    UniProtKB/TrEMBL
    A0A9L6KEB7
    Related
    ENSMUSP00000159618.1, ENSMUST00000249236.1

  2. XM_006527323.4 → XP_006527386.1  uncharacterized protein LOC69369 isoform X2

    UniProtKB/TrEMBL
    A0A9L6KDG8
    Related
    ENSMUSP00000159615.1, ENSMUST00000249233.1

  3. XM_006527325.4 → XP_006527388.1  uncharacterized protein LOC69369 isoform X4

    UniProtKB/TrEMBL
    A0A9L6KDU6
    Related
    ENSMUSP00000159612.1, ENSMUST00000249230.1

  4. XM_011247334.1 → XP_011245636.1  uncharacterized protein LOC69369 isoform X3

    UniProtKB/TrEMBL
    A0A9L6KDU6
Nucleotide Protein Strain
Heading Accession and Version

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