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Cypt3 cysteine-rich perinuclear theca 3 [ Mus musculus (house mouse) ]

Gene ID: 69361, updated on 8-Feb-2024

Summary

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Official Symbol
Cypt3provided by MGI
Official Full Name
cysteine-rich perinuclear theca 3provided by MGI
Primary source
MGI:MGI:1916611
See related
Ensembl:ENSMUSG00000048573 AllianceGenome:MGI:1916611
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ckt1r1; 1700006H02Rik
Expression
Restricted expression toward testis adult (RPKM 51.5) See more
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Genomic context

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Location:
X F3; X 68.65 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (152341589..152342431)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (153558593..153559435)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_48121 Neighboring gene ubiquilin 2 Neighboring gene predicted gene, 39543 Neighboring gene predicted gene, 25793 Neighboring gene predicted gene 8534

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of a novel postacrosomal perinuclear theca-specific protein, CYPT1. Kitamura K, et al. Biol Reprod, 2004 Dec. PMID 15286030
  2. Identification and expression profiling of 10 novel spermatid expressed CYPT genes. Hansen MA, et al. Mol Reprod Dev, 2006 May. PMID 16477651
  3. A shared promoter region suggests a common ancestor for the human VCX/Y, SPANX, and CSAG gene families and the murine CYPT family. Hansen MA, et al. Mol Reprod Dev, 2008 Feb. PMID 17342728
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Human VCX/Y, SPANX, and CSAG2 gene families together with the murine SPANX gene and the CYPT family may share a common ancestor.
    Title: A shared promoter region suggests a common ancestor for the human VCX/Y, SPANX, and CSAG gene families and the murine CYPT family.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Clone Names

  • MGC58437

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
cysteine-rich perinuclear theca 3
Names
basic protein CKT1R1
cysteine-rich perinuclear theca protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310716.1 → NP_001297645.1  cysteine-rich perinuclear theca 3 isoform 1

    See identical proteins and their annotated locations for NP_001297645.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AL844583, BC048527
    Consensus CDS
    CCDS81188.1
    UniProtKB/TrEMBL
    B1AY64, Q3MSD3
    Related
    ENSMUSP00000108192.2, ENSMUST00000112573.8

  2. NM_173367.3 → NP_775543.2  cysteine-rich perinuclear theca 3 isoform 2

    See identical proteins and their annotated locations for NP_775543.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    AL844583, AV047945, BC048527
    Consensus CDS
    CCDS30483.1
    UniProtKB/TrEMBL
    Q3MSD3, Q80ZR9
    Related
    ENSMUSP00000057687.4, ENSMUST00000056754.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    152341589..152342431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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