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1700001J03Rik RIKEN cDNA 1700001J03 gene [ Mus musculus (house mouse) ]

Gene ID: 69282, updated on 8-Feb-2024

Summary

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Official Symbol
1700001J03Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700001J03 geneprovided by MGI
Primary source
MGI:MGI:1916532
See related
Ensembl:ENSMUSG00000095040 AllianceGenome:MGI:1916532
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 163.0) See more
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Genomic context

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See 1700001J03Rik in Genome Data Viewer
Location:
5 G3; 5 85.17 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (146119251..146125563, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (146182441..146190196, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5565 Neighboring gene predicted gene 6309 Neighboring gene cytochrome P450, family 3, subfamily a, member 60, pseudogene Neighboring gene ring finger protein (C3H2C3 type) 6 Neighboring gene STARR-positive B cell enhancer ABC_E4806

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC69282

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008547.2 → NP_001008547.1  uncharacterized protein LOC69282

    See identical proteins and their annotated locations for NP_001008547.1

    Status: VALIDATED

    Source sequence(s)
    AC113316
    Consensus CDS
    CCDS51699.1
    UniProtKB/TrEMBL
    Q80ZR8
    Related
    ENSMUSP00000073399.6, ENSMUST00000073721.7
    Conserved Domains (1) summary
    cd06224
    Location:89 → 183
    REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...

  2. NM_001418329.1 → NP_001405258.1  uncharacterized protein LOC69282

    Status: VALIDATED

    Source sequence(s)
    AC113316
    UniProtKB/TrEMBL
    Q80ZR8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    146119251..146125563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254790.2 → XP_030110650.1  uncharacterized protein LOC69282 isoform X1

    Conserved Domains (1) summary
    cd06224
    Location:89 → 183
    REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...
Nucleotide Protein Strain
Heading Accession and Version

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