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3300002I08Rik RIKEN cDNA 3300002I08 gene [ Mus musculus (house mouse) ]

Gene ID: 69277, updated on 8-Feb-2024

Summary

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Official Symbol
3300002I08Rikprovided by MGI
Official Full Name
RIKEN cDNA 3300002I08 geneprovided by MGI
Primary source
MGI:MGI:1916527
See related
Ensembl:ENSMUSG00000063364 AllianceGenome:MGI:1916527
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900016H11Rik
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2 G3; 2 74.29 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (150142169..150204922, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (150306363..150362955, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05999 Neighboring gene zinc finger protein 937 Neighboring gene STARR-seq mESC enhancer starr_06000 Neighboring gene zinc finger protein 1005 Neighboring gene STARR-seq mESC enhancer starr_06001 Neighboring gene STARR-positive B cell enhancer ABC_E1012 Neighboring gene mitochondrial ribosomal protein L47 pseudogene Neighboring gene zinc finger protein 1001 Neighboring gene STARR-positive B cell enhancer ABC_E7866 Neighboring gene STARR-seq mESC enhancer starr_06004 Neighboring gene predicted gene 14122 Neighboring gene zinc finger protein 442

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
zinc finger protein family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027017.1 → NP_081293.4  zinc finger protein family member

    See identical proteins and their annotated locations for NP_081293.4

    Status: VALIDATED

    Source sequence(s)
    AL929042
    Consensus CDS
    CCDS50740.1
    UniProtKB/TrEMBL
    Q9CXH3
    Related
    ENSMUSP00000055454.6, ENSMUST00000051153.6
    Conserved Domains (1) summary
    pfam01352
    Location:21 → 62
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    150142169..150204922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162536.1 → XP_036018429.1  zinc finger protein family member isoform X4

    UniProtKB/TrEMBL
    Q9CXH3
    Conserved Domains (1) summary
    pfam01352
    Location:21 → 62
    KRAB; KRAB box

  2. XM_006500134.5 → XP_006500197.1  zinc finger protein family member isoform X4

    See identical proteins and their annotated locations for XP_006500197.1

    UniProtKB/TrEMBL
    Q9CXH3
    Conserved Domains (1) summary
    pfam01352
    Location:21 → 62
    KRAB; KRAB box

  3. XM_036162535.1 → XP_036018428.1  zinc finger protein family member isoform X4

    UniProtKB/TrEMBL
    Q9CXH3
    Conserved Domains (1) summary
    pfam01352
    Location:21 → 62
    KRAB; KRAB box

  4. XM_011239763.4 → XP_011238065.1  zinc finger protein family member isoform X5

    Conserved Domains (2) summary
    sd00017
    Location:95 → 115
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:22 → 62
    KRAB; KRAB box

  5. XM_011239764.4 → XP_011238066.1  zinc finger protein family member isoform X6

    Conserved Domains (2) summary
    sd00017
    Location:95 → 115
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:22 → 62
    KRAB; KRAB box

  6. XM_030252049.2 → XP_030107909.1  zinc finger protein family member isoform X8

    Conserved Domains (1) summary
    pfam01352
    Location:22 → 62
    KRAB; KRAB box

  7. XM_011239765.4 → XP_011238067.1  zinc finger protein family member isoform X7

    Conserved Domains (1) summary
    pfam01352
    Location:22 → 62
    KRAB; KRAB box

  8. XM_030252045.2 → XP_030107905.1  zinc finger protein family member isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:287 → 443
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:263 → 283
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:22 → 62
    KRAB; KRAB box
    pfam13465
    Location:471 → 496
    zf-H2C2_2; Zinc-finger double domain

  9. XM_030252044.2 → XP_030107904.1  zinc finger protein family member isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:104 → 471
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:291 → 311
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:22 → 62
    KRAB; KRAB box
    pfam13465
    Location:499 → 524
    zf-H2C2_2; Zinc-finger double domain

  10. XM_030252046.2 → XP_030107906.1  zinc finger protein family member isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:54 → 421
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:241 → 261
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:449 → 474
    zf-H2C2_2; Zinc-finger double domain

  11. XM_030252047.2 → XP_030107907.1  zinc finger protein family member isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:54 → 421
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:241 → 261
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:449 → 474
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_004940724.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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