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Trappc3l trafficking protein particle complex 3 like [ Mus musculus (house mouse) ]

Gene ID: 692132, updated on 5-Mar-2024

Summary

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Official Symbol
Trappc3lprovided by MGI
Official Full Name
trafficking protein particle complex 3 likeprovided by MGI
Primary source
MGI:MGI:3642034
See related
Ensembl:ENSMUSG00000071340 AllianceGenome:MGI:3642034
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bet3l
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network membrane and cytosol. Orthologous to human TRAPPC3L (trafficking protein particle complex subunit 3L). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
10 B1; 10 18.85 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (33913593..33985811)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (34037597..34109815)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A830082N09 gene Neighboring gene RWD domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E9339 Neighboring gene calcium homeostasis modulator family member 4 Neighboring gene STARR-seq mESC enhancer starr_26263 Neighboring gene calcium homeostasis modulator family member 5 Neighboring gene STARR-positive B cell enhancer ABC_E11433 Neighboring gene calcium homeostasis modulator family member 6 Neighboring gene dermatan sulfate epimerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in Golgi vesicle transport IEA
Inferred from Electronic Annotation
more info
  
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
part_of TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPP complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in cis-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
trafficking protein particle complex subunit 3-like protein
Names
BET3 like
BET3-like protein
TRAPPC3-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162937.1 → NP_001156409.1  trafficking protein particle complex subunit 3-like protein

    See identical proteins and their annotated locations for NP_001156409.1

    Status: VALIDATED

    Source sequence(s)
    BC099502
    Consensus CDS
    CCDS48535.1
    UniProtKB/Swiss-Prot
    Q4KL14
    UniProtKB/TrEMBL
    A0A1W2P6J5
    Related
    ENSMUSP00000093432.2, ENSMUST00000095758.3
    Conserved Domains (1) summary
    cd14942
    Location:15 → 170
    TRAPPC3_bet3; Bet3-TRAPPC3 subunit of the TRAPP complex

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    33913593..33985811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4KL14.1 GenPept UniProtKB/Swiss-Prot:Q4KL14

Gene LinkOut

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