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FAM86DP family with sequence similarity 86 member D, pseudogene [ Homo sapiens (human) ]

Gene ID: 692099, updated on 8-Nov-2023

Summary

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Official Symbol
FAM86DPprovided by HGNC
Official Full Name
family with sequence similarity 86 member D, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:32659
See related
Ensembl:ENSG00000291223 AllianceGenome:HGNC:32659
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM86D
Expression
Ubiquitous expression in ovary (RPKM 4.4), endometrium (RPKM 3.2) and 25 other tissues See more
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Genomic context

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Location:
3p12.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (75421552..75435115, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (75473914..75487479, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (75470703..75484266, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905452 Neighboring gene EVA1C pseudogene 5 Neighboring gene LSP1 pseudogene 2 Neighboring gene ALG1 like 6, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:75474297-75474798 Neighboring gene Sharpr-MPRA regulatory region 2645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20103 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14536 Neighboring gene long intergenic non-protein coding RNA 2018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:75493298-75493842 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 2 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence, annotation and analysis of human chromosome 3. Muzny DM, et al. Nature, 2006 Apr 27. PMID 16641997
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024241.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139453, BC016686, BC068011, DA753838
    Related
    ENST00000459803.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    75421552..75435115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159989.1 Reference GRCh38.p14 PATCHES

    Range
    68199..81762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    75473914..75487479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases