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Platr10 pluripotency associated transcript 10 [ Mus musculus (house mouse) ]

Gene ID: 69193, updated on 8-Feb-2024

Summary

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Official Symbol
Platr10provided by MGI
Official Full Name
pluripotency associated transcript 10provided by MGI
Primary source
MGI:MGI:1916443
See related
Ensembl:ENSMUSG00000099370 AllianceGenome:MGI:1916443
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2410007B07Rik
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
3; 3 E3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (75554748..75563038, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (75647441..75655731, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene programmed cell death 10 Neighboring gene STARR-positive B cell enhancer ABC_E2071 Neighboring gene serine (or cysteine) peptidase inhibitor, clade I, member 1 Neighboring gene STARR-seq mESC enhancer starr_07971 Neighboring gene STARR-positive B cell enhancer ABC_E9553 Neighboring gene STARR-positive B cell enhancer mm9_chr3:75547372-75547672 Neighboring gene predicted gene, 25846 Neighboring gene STARR-seq mESC enhancer starr_07973 Neighboring gene STARR-positive B cell enhancer ABC_E11194 Neighboring gene golgi integral membrane protein 4 Neighboring gene STARR-positive B cell enhancer ABC_E1260

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040539.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC140430, AK010436
    Related
    ENSMUST00000190602.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    75554748..75563038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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