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1810030O07Rik RIKEN cDNA 1810030O07 gene [ Mus musculus (house mouse) ]

Gene ID: 69155, updated on 5-Mar-2024

Summary

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Official Symbol
1810030O07Rikprovided by MGI
Official Full Name
RIKEN cDNA 1810030O07 geneprovided by MGI
Primary source
MGI:MGI:1916405
See related
Ensembl:ENSMUSG00000044148 AllianceGenome:MGI:1916405
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human CXorf38 (chromosome X open reading frame 38). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E14 (RPKM 5.2), bladder adult (RPKM 5.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 1810030O07Rik in Genome Data Viewer
Location:
X A1.1; X 7.5 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (12521118..12540175, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (12654879..12673936, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene nucleolar protein 56 pseudogene Neighboring gene STARR-seq mESC enhancer starr_46759 Neighboring gene predicted pseudogene 4984 Neighboring gene mediator complex subunit 14 Neighboring gene predicted gene, 52422 Neighboring gene STARR-seq mESC enhancer starr_46762 Neighboring gene predicted gene 14634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein CXorf38 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175141.6 → NP_780350.1  uncharacterized protein CXorf38 homolog

    See identical proteins and their annotated locations for NP_780350.1

    Status: VALIDATED

    Source sequence(s)
    BC137660, BX511770
    Consensus CDS
    CCDS30024.1
    UniProtKB/Swiss-Prot
    Q3TFM9, Q8C5K5, Q8CF12
    UniProtKB/TrEMBL
    A2BDN9
    Related
    ENSMUSP00000059095.7, ENSMUST00000060108.7
    Conserved Domains (1) summary
    pfam15112
    Location:9 → 317
    DUF4559; Domain of unknown function (DUF4559)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    12521118..12540175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006527698.4 → XP_006527761.1  uncharacterized protein CXorf38 homolog isoform X1

    See identical proteins and their annotated locations for XP_006527761.1

    UniProtKB/Swiss-Prot
    Q3TFM9, Q8C5K5, Q8CF12
    UniProtKB/TrEMBL
    A2BDN9
    Conserved Domains (1) summary
    pfam15112
    Location:9 → 317
    DUF4559; Domain of unknown function (DUF4559)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C5K5.1 GenPept UniProtKB/Swiss-Prot:Q8C5K5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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