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Ydjc YdjC homolog (bacterial) [ Mus musculus (house mouse) ]

Gene ID: 69101, updated on 21-Apr-2024

Summary

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Official Symbol
Ydjcprovided by MGI
Official Full Name
YdjC homolog (bacterial)provided by MGI
Primary source
MGI:MGI:1916351
See related
Ensembl:ENSMUSG00000041774 AllianceGenome:MGI:1916351
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810015A11Rik; 4930521M19Rik
Summary
Predicted to enable deacetylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in several structures, including alimentary system; ovary; and trachea. Orthologous to human YDJC (YdjC chitooligosaccharide deacetylase homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in duodenum adult (RPKM 33.8), colon adult (RPKM 31.0) and 25 other tissues See more
Orthologs
human all
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Genomic context

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Location:
16 A3; 16 10.63 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (16964813..16966721)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (17146949..17148857)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E214 Neighboring gene stromal cell-derived factor 2-like 1 Neighboring gene Rps20 pseudogene Neighboring gene coiled-coil domain containing 116 Neighboring gene STARR-positive B cell enhancer ABC_E4157 Neighboring gene ubiquitin-conjugating enzyme E2L 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:17201546-17201655 Neighboring gene predicted gene, 22129

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (3) 
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC144470

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables deacetylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
carbohydrate deacetylase
Names
UPF0249 protein ydjC homolog
NP_001365723.1
NP_081216.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378794.1 → NP_001365723.1  carbohydrate deacetylase isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC154667
    Conserved Domains (1) summary
    cd10806
    Location:7 → 287
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

  2. NM_026940.4 → NP_081216.1  carbohydrate deacetylase isoform 1

    See identical proteins and their annotated locations for NP_081216.1

    Status: VALIDATED

    Source sequence(s)
    AC154667, AI642588, AK007503
    Consensus CDS
    CCDS27996.1
    UniProtKB/Swiss-Prot
    Q14BV6, Q8C5Z5, Q9D8Z7
    Related
    ENSMUSP00000069864.5, ENSMUST00000069064.7
    Conserved Domains (1) summary
    cd10806
    Location:7 → 286
    YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    16964813..16966721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q14BV6.2 GenPept UniProtKB/Swiss-Prot:Q14BV6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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