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6330418K02Rik RIKEN cDNA 6330418K02 gene [ Mus musculus (house mouse) ]

Gene ID: 69004, updated on 8-Feb-2024

Summary

Official Symbol
6330418K02Rikprovided by MGI
Official Full Name
RIKEN cDNA 6330418K02 geneprovided by MGI
Primary source
MGI:MGI:3697416
See related
Ensembl:ENSMUSG00000085227 AllianceGenome:MGI:3697416
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in genital fat pad adult (RPKM 9.7), CNS E11.5 (RPKM 3.7) and 27 other tissues See more
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Genomic context

Location:
5 G2; 5 77.0 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (138262307..138264923)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (138264045..138266661)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene neurexophilin and PC-esterase domain family, member 5 Neighboring gene predicted gene, 22956 Neighboring gene STARR-positive B cell enhancer ABC_E532 Neighboring gene STARR-positive B cell enhancer ABC_E4800 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 Neighboring gene trafficking protein particle complex 14 Neighboring gene galactose-3-O-sulfotransferase 4 Neighboring gene STARR-positive B cell enhancer ABC_E3630 Neighboring gene STAG3 cohesin complex component Neighboring gene glypican 2 cerebroglycan Neighboring gene poliovirus receptor related immunoglobulin domain containing, pseudogene Neighboring gene poliovirus receptor related immunoglobulin domain containing

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045821.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC159257
    Related
    ENSMUST00000124298.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    138262307..138264923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)