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1110065P20Rik RIKEN cDNA 1110065P20 gene [ Mus musculus (house mouse) ]

Gene ID: 68920, updated on 5-Mar-2024

Summary

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Official Symbol
1110065P20Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110065P20 geneprovided by MGI
Primary source
MGI:MGI:1916170
See related
Ensembl:ENSMUSG00000078570 AllianceGenome:MGI:1916170
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C530005M16Rik
Summary
Is expressed in central nervous system; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human C1orf122 (chromosome 1 open reading frame 122). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 60.4), ovary adult (RPKM 37.5) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
4 D2.2; 4 57.92 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (124743284..124744479, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (124849485..124850730, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12915 Neighboring gene STARR-positive B cell enhancer ABC_E4664 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:124430874-124431061 Neighboring gene inositol polyphosphate-5-phosphatase B Neighboring gene microRNA 698 Neighboring gene STARR-positive B cell enhancer ABC_E7986 Neighboring gene metal response element binding transcription factor 1 Neighboring gene STARR-seq mESC enhancer starr_11345 Neighboring gene predicted gene, 54256 Neighboring gene mannosidase, endo-alpha-like Neighboring gene yrdC domain containing (E.coli) Neighboring gene RIKEN cDNA 1700125G02 gene Neighboring gene Eph receptor A10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf122 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142727.2 → NP_001136199.1  uncharacterized protein C1orf122 homolog isoform 2

    See identical proteins and their annotated locations for NP_001136199.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1. Variants 2 and 6 both encode the same isoform (2).
    Source sequence(s)
    AL606933
    Consensus CDS
    CCDS51298.1
    UniProtKB/TrEMBL
    E9Q9M4
    Related
    ENSMUSP00000130892.2, ENSMUST00000163946.2
    Conserved Domains (1) summary
    pfam15855
    Location:1 → 47
    DUF4726; Domain of unknown function (DUF4726)

  2. NM_001347196.2 → NP_001334125.1  uncharacterized protein C1orf122 homolog isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AL606933
    Consensus CDS
    CCDS84792.1
    UniProtKB/Swiss-Prot
    B1ARW8
    Related
    ENSMUSP00000101796.3, ENSMUST00000106190.10

  3. NM_001404054.1 → NP_001390983.1  uncharacterized protein C1orf122 homolog isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
    Source sequence(s)
    AL606933

  4. NM_001404055.1 → NP_001390984.1  uncharacterized protein C1orf122 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL606933

  5. NM_001404056.1 → NP_001390985.1  uncharacterized protein C1orf122 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AL606933

  6. NM_001404057.1 → NP_001390986.1  uncharacterized protein C1orf122 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL606933
    UniProtKB/TrEMBL
    E9Q9M4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    124743284..124744479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B1ARW8.1 GenPept UniProtKB/Swiss-Prot:B1ARW8

Gene LinkOut

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