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Ccdc167 coiled-coil domain containing 167 [ Mus musculus (house mouse) ]

Gene ID: 68597, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc167provided by MGI
Official Full Name
coiled-coil domain containing 167provided by MGI
Primary source
MGI:MGI:1915847
See related
Ensembl:ENSMUSG00000024018 AllianceGenome:MGI:1915847
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110021J02Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in cerebellum adult (RPKM 7.0), CNS E11.5 (RPKM 5.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
17 A3.3; 17 15.48 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (29914951..29935991, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (29695977..29717041, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7509 Neighboring gene predicted gene, 28043 Neighboring gene ring finger protein 8 Neighboring gene predicted gene, 20161 Neighboring gene cap methyltransferase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1501 Neighboring gene STARR-positive B cell enhancer ABC_E7510 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29906709-29906939 Neighboring gene STARR-positive B cell enhancer mm9_chr17:29978669-29978970 Neighboring gene STARR-seq mESC enhancer starr_42296 Neighboring gene STARR-seq mESC enhancer starr_42297 Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 1 Neighboring gene STARR-seq mESC enhancer starr_42299 Neighboring gene predicted gene, 41559 Neighboring gene STARR-seq mESC enhancer starr_42301 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:30116968-30117151 Neighboring gene predicted gene, 22327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of a multi-functional cDNA library specific for mouse pancreatic islets and its application to microarray. Nishimura M, et al. DNA Res, 2004 Oct 31. PMID 15747579
  2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 167
Names
transmembrane and coiled-coil domain-containing protein C6orf129 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163741.2 → NP_001157213.1  coiled-coil domain-containing protein 167 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). Isoform 1 contains an in-frame start site twelve codons upstream from the currently annotated site, but Kozak sequence considerations and orthology data support use of the downstream AUG.
    Source sequence(s)
    AC154279, AK049389, BP754204, BY067347
    Consensus CDS
    CCDS50052.1
    UniProtKB/Swiss-Prot
    Q9D162
    Related
    ENSMUSP00000116591.2, ENSMUST00000129091.9
    Conserved Domains (1) summary
    pfam15188
    Location:10 → 90
    CCDC-167; Coiled-coil domain-containing protein 167

  2. NM_026782.2 → NP_081058.1  coiled-coil domain-containing protein 167 isoform 2

    See identical proteins and their annotated locations for NP_081058.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice pattern in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1. Isoform 2 contains an in-frame start site twelve codons upstream from the currently annotated site, but Kozak sequence considerations and orthology data support use of the downstream AUG.
    Source sequence(s)
    BC022730, BY067347
    Consensus CDS
    CCDS50051.1
    UniProtKB/Swiss-Prot
    Q8BQL8, Q8C3L9, Q8R1Y8, Q9D162
    Related
    ENSMUSP00000123612.2, ENSMUST00000128751.3
    Conserved Domains (1) summary
    pfam15188
    Location:10 → 90
    CCDC-167; Coiled-coil domain-containing protein 167

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    29914951..29935991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D162.2 GenPept UniProtKB/Swiss-Prot:Q9D162

Gene LinkOut

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