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Sox6os SRY (sex determining region Y)-box 6, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 68469, updated on 8-Feb-2024

Summary

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Official Symbol
Sox6osprovided by MGI
Official Full Name
SRY (sex determining region Y)-box 6, opposite strandprovided by MGI
Primary source
MGI:MGI:1915719
See related
Ensembl:ENSMUSG00000030664 AllianceGenome:MGI:1915719
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110006G14Rik
Expression
Broad expression in subcutaneous fat pad adult (RPKM 4.1), mammary gland adult (RPKM 3.7) and 18 other tissues See more
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Genomic context

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Location:
7 F1; 7 61.42 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (115631214..115631785)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (116031979..116032550)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53367 Neighboring gene STARR-seq mESC enhancer starr_19945 Neighboring gene predicted gene, 51455 Neighboring gene SRY (sex determining region Y)-box 6 Neighboring gene STARR-positive B cell enhancer mm9_chr7:122759944-122760244 Neighboring gene STARR-seq mESC enhancer starr_19946 Neighboring gene STARR-seq mESC enhancer starr_19947 Neighboring gene STARR-seq mESC enhancer starr_19949 Neighboring gene STARR-seq mESC enhancer starr_19950 Neighboring gene STARR-seq mESC enhancer starr_19951 Neighboring gene STARR-seq mESC enhancer starr_19952 Neighboring gene STARR-seq mESC enhancer starr_19954 Neighboring gene RIKEN cDNA 1110004F10 gene Neighboring gene RIKEN cDNA 1700003G18 gene Neighboring gene STARR-positive B cell enhancer mm9_chr7:123236585-123236886 Neighboring gene STARR-positive B cell enhancer mm9_chr7:123237410-123237710 Neighboring gene nucleoporin 35 pseudogene Neighboring gene pleckstrin homology domain containing, family A member 7 Neighboring gene predicted gene 44867

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152104.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102696, AK003497
    Related
    ENSMUST00000032900.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    115631214..115631785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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