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Gata6os GATA binding protein 6, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 68434, updated on 21-Apr-2024

Summary

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Official Symbol
Gata6osprovided by MGI
Official Full Name
GATA binding protein 6, opposite strandprovided by MGI
Primary source
MGI:MGI:1915684
See related
Ensembl:ENSMUSG00000097222 AllianceGenome:MGI:1915684
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gata6as; LncGata6; 1010001N08Rik
Summary
Is expressed in heart; intestine; liver; and lung. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in adrenal adult (RPKM 2.8), bladder adult (RPKM 2.5) and 19 other tissues See more
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Genomic context

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Location:
18 A1; 18 5.62 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (11042037..11052567, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (11042037..11052567, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35814 Neighboring gene STARR-seq mESC enhancer starr_43807 Neighboring gene STARR-seq mESC enhancer starr_43808 Neighboring gene RIKEN cDNA 9130001E16 gene Neighboring gene STARR-seq mESC enhancer starr_43809 Neighboring gene PHD finger protein 14 pseudogene Neighboring gene GATA binding protein 6 Neighboring gene VISTA enhancer mm138 Neighboring gene predicted gene, 35918 Neighboring gene STARR-positive B cell enhancer ABC_E8703 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:11816567-11816720 Neighboring gene STARR-seq mESC enhancer starr_43816 Neighboring gene retinoblastoma binding protein 8, endonuclease Neighboring gene predicted gene, 54029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Divergent lncRNAs Regulate Gene Expression and Lineage Differentiation in Pluripotent Cells. Luo S, et al. Cell Stem Cell, 2016 May 5. PMID 26996597
  2. The lncRNA GATA6-AS epigenetically regulates endothelial gene expression via interaction with LOXL2. Neumann P, et al. Nat Commun, 2018 Jan 16. PMID 29339785, Free PMC Article
  3. LncGata6 maintains stemness of intestinal stem cells and promotes intestinal tumorigenesis. Zhu P, et al. Nat Cell Biol, 2018 Oct. PMID 30224759
  4. Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development. Han X, et al. J Mol Cell Biol, 2018 Apr 1. PMID 29420831
  5. Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development. Herriges MJ, et al. Genes Dev, 2014 Jun 15. PMID 24939938, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105022.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK003136, CF382894

  2. NR_105023.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has three downstream exons in place of the last exon compared to variant 1.
    Source sequence(s)
    AC130654, AEKQ02056240, AK003136, CK332479
    Related
    ENSMUST00000231895.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    11042037..11052567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.