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0610030E20Rik RIKEN cDNA 0610030E20 gene [ Mus musculus (house mouse) ]

Gene ID: 68364, updated on 5-Mar-2024

Summary

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Official Symbol
0610030E20Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610030E20 geneprovided by MGI
Primary source
MGI:MGI:1915614
See related
Ensembl:ENSMUSG00000058706 AllianceGenome:MGI:1915614
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1500031N04Rik; 2810411C16Rik
Summary
Orthologous to human C2orf68 (chromosome 2 open reading frame 68). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 9.3), thymus adult (RPKM 9.1) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
6 C1; 6 32.27 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (72324017..72330145)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (72347034..72353162)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene surfactant associated protein B Neighboring gene STARR-seq mESC enhancer starr_16282 Neighboring gene ubiquitin specific peptidase 39 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:72295216-72295399 Neighboring gene transmembrane protein 150A Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:72312603-72312712 Neighboring gene ring finger protein 181 Neighboring gene vesicle-associated membrane protein 5 Neighboring gene predicted gene, 52494

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0561 protein C2orf68 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026696.1 → NP_080972.1  UPF0561 protein C2orf68 homolog

    See identical proteins and their annotated locations for NP_080972.1

    Status: VALIDATED

    Source sequence(s)
    AC116115, BB844069, BC066053, BE945833
    Consensus CDS
    CCDS51808.1
    UniProtKB/Swiss-Prot
    Q149G0, Q9DCK6
    Related
    ENSMUSP00000076957.4, ENSMUST00000077783.5
    Conserved Domains (1) summary
    pfam10573
    Location:4 → 126
    UPF0561; uncharacterized protein family UPF0561

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    72324017..72330145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006506534.5 → XP_006506597.1  UPF0561 protein C2orf68 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506597.1

    Conserved Domains (1) summary
    pfam10573
    Location:116 → 211
    UPF0561; Uncharacterized protein family UPF0561
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q149G0.1 GenPept UniProtKB/Swiss-Prot:Q149G0

Gene LinkOut

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