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Snhg17 small nucleolar RNA host gene 17 [ Mus musculus (house mouse) ]

Gene ID: 68108, updated on 8-Feb-2024

Summary

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Official Symbol
Snhg17provided by MGI
Official Full Name
small nucleolar RNA host gene 17provided by MGI
Primary source
MGI:MGI:1915358
See related
Ensembl:ENSMUSG00000085385 AllianceGenome:MGI:1915358
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9430008C03Rik
Summary
Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 8.9), CNS E11.5 (RPKM 7.4) and 28 other tissues See more
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Genomic context

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Location:
2 H1; 2 78.72 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (158195620..158203442, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (158353700..158361522, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 34571 Neighboring gene bactericidal permeablility increasing protein Neighboring gene lipopolysaccharide binding protein Neighboring gene CRISPRi-validated cis-regulatory element for Snhg11 and Snhg17 Neighboring gene predicted gene, 24411 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene predicted gene, 23925 Neighboring gene small nucleolar RNA host gene 11 Neighboring gene predicted gene, 25187 Neighboring gene predicted gene, 25129

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. LncRNA SNHG17 knockdown promotes Parkin-dependent mitophagy and reduces apoptosis of podocytes through Mst1. Guo F, et al. Cell Cycle, 2020 Aug. PMID 32627655, Free PMC Article
  2. Local regulation of gene expression by lncRNA promoters, transcription and splicing. Engreitz JM, et al. Nature, 2016 Nov 17. PMID 27783602, Free PMC Article
  3. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
  4. The genetic program of hematopoietic stem cells. Phillips RL, et al. Science, 2000 Jun 2. PMID 10834841
  5. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA SNHG17 knockdown promotes Parkin-dependent mitophagy and reduces apoptosis of podocytes through Mst1.
    Title: LncRNA SNHG17 knockdown promotes Parkin-dependent mitophagy and reduces apoptosis of podocytes through Mst1.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015463.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK046044, AL663063, BU696406, CO043985
    Related
    ENSMUST00000242851.1

  2. NR_027887.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has two alternate splice sites, as compared to variant 1. It represents the shorter transcript.
    Source sequence(s)
    AK007971, AK046044, AL663063, CO043985
    Related
    ENSMUST00000133449.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    158195620..158203442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases