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1600012H06Rik RIKEN cDNA 1600012H06 gene [ Mus musculus (house mouse) ]

Gene ID: 67912, updated on 5-Mar-2024

Summary

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Official Symbol
1600012H06Rikprovided by MGI
Official Full Name
RIKEN cDNA 1600012H06 geneprovided by MGI
Primary source
MGI:MGI:1915162
See related
Ensembl:ENSMUSG00000050088 AllianceGenome:MGI:1915162
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to act upstream of or within apoptotic process. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart ventricle; lung; pituitary gland; and tongue. Orthologous to human C6orf120 (chromosome 6 open reading frame 120). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 18.4), colon adult (RPKM 16.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
17 A2; 17 8.95 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (15163446..15166201)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (14943184..14945939)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene STARR-seq mESC enhancer starr_41895 Neighboring gene predicted gene, 23352 Neighboring gene WD repeat domain 27 Neighboring gene STARR-seq mESC enhancer starr_41897 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:15046536-15046719 Neighboring gene STARR-positive B cell enhancer ABC_E9166 Neighboring gene PHD finger protein 10 Neighboring gene dynein light chain Tctex-type 2A3 Neighboring gene STARR-seq mESC enhancer starr_41898 Neighboring gene ER membrane associated RNA degradation like 2 Neighboring gene predicted gene 3255

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UPF0669 protein C6orf120 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083880.1 → NP_001077349.1  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_001077349.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    AC154411
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q80ST2, Q8CEI9, Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    Q05CC8
    Related
    ENSMUSP00000133628.2, ENSMUST00000174004.2
    Conserved Domains (1) summary
    pfam17065
    Location:1 → 185
    UPF0669; Putative cytokine, C6ORF120

  2. NM_001083881.1 → NP_001077350.1  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_001077350.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) and variants 2, 3 and 4 encode the same protein.
    Source sequence(s)
    AC154411, AK150772, AU254107, BB610149
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q80ST2, Q8CEI9, Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    Q05CC8
    Related
    ENSMUSP00000125970.3, ENSMUST00000164837.3
    Conserved Domains (1) summary
    pfam17065
    Location:1 → 185
    UPF0669; Putative cytokine, C6ORF120

  3. NM_001083882.1 → NP_001077351.1  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_001077351.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks a splice junction in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    AK076441, AK083064, AU254107, BB610149
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q80ST2, Q8CEI9, Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    Q05CC8
    Conserved Domains (1) summary
    pfam17065
    Location:1 → 185
    UPF0669; Putative cytokine, C6ORF120

  4. NM_026451.2 → NP_080727.2  UPF0669 protein C6orf120 homolog precursor

    See identical proteins and their annotated locations for NP_080727.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    AK005427, AK083064, AU254107, BB610149
    Consensus CDS
    CCDS37444.1
    UniProtKB/Swiss-Prot
    Q80ST2, Q8CEI9, Q9CU86, Q9DAY5
    UniProtKB/TrEMBL
    Q05CC8
    Related
    ENSMUSP00000093344.5, ENSMUST00000052691.9
    Conserved Domains (1) summary
    pfam17065
    Location:1 → 185
    UPF0669; Putative cytokine, C6ORF120

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    15163446..15166201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9DAY5.1 GenPept UniProtKB/Swiss-Prot:Q9DAY5

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