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Lce1f late cornified envelope 1F [ Mus musculus (house mouse) ]

Gene ID: 67828, updated on 27-Feb-2024

Summary

Official Symbol
Lce1fprovided by MGI
Official Full Name
late cornified envelope 1Fprovided by MGI
Primary source
MGI:MGI:1915078
See related
Ensembl:ENSMUSG00000042124 AllianceGenome:MGI:1915078
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110055J05Rik
Summary
Predicted to enable identical protein binding activity. Is expressed in oral epithelium; stomach; and testis. Orthologous to several human genes including LCE1A (late cornified envelope 1A); LCE1B (late cornified envelope 1B); and LCE1C (late cornified envelope 1C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward stomach adult (RPKM 95.1) See more
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Genomic context

Location:
3 F1; 3 40.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92626003..92627657, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92718696..92720350, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide pseudogene Neighboring gene STARR-seq mESC enhancer starr_08314 Neighboring gene late cornified envelope 1E Neighboring gene late cornified envelope 1G Neighboring gene late cornified envelope 1H

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (2) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026394.3NP_080670.2  late cornified envelope 1F

    See identical proteins and their annotated locations for NP_080670.2

    Status: VALIDATED

    Source sequence(s)
    AK003518, BC060283
    Consensus CDS
    CCDS38515.1
    UniProtKB/TrEMBL
    B9EJP6
    Related
    ENSMUSP00000037349.4, ENSMUST00000047153.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    92626003..92627657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)