U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Dalrd3 DALR anticodon binding domain containing 3 [ Mus musculus (house mouse) ]

Gene ID: 67789, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Dalrd3provided by MGI
Official Full Name
DALR anticodon binding domain containing 3provided by MGI
Primary source
MGI:MGI:1915039
See related
Ensembl:ENSMUSG00000019039 AllianceGenome:MGI:1915039
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mir-425; 6330580J24Rik
Summary
Predicted to enable tRNA binding activity. Predicted to be involved in tRNA C3-cytosine methylation. Is expressed in central nervous system; dorsal root ganglion; and olfactory epithelium. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 86. Orthologous to human DALRD3 (DALR anticodon binding domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 51.6), thymus adult (RPKM 39.7) and 28 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
9 F2; 9 59.51 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108444710..108449972)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108567484..108572773)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3861 Neighboring gene STARR-positive B cell enhancer ABC_E3862 Neighboring gene inosine monophosphate dehydrogenase 2 Neighboring gene STARR-positive B cell enhancer ABC_E3863 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 3 Neighboring gene microRNA 191 Neighboring gene microRNA 425 Neighboring gene STARR-seq mESC enhancer starr_25213 Neighboring gene WD repeat domain 6 Neighboring gene STARR-seq mESC enhancer starr_25214 Neighboring gene prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:108551788-108551897 Neighboring gene STARR-seq mESC enhancer starr_25220

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. miRBase: integrating microRNA annotation and deep-sequencing data. Kozomara A, et al. Nucleic Acids Res, 2011 Jan. PMID 21037258, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables aminoacyl-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables tRNA binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA C3-cytosine methylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA C3-cytosine methylation ISO
Inferred from Sequence Orthology
more info
  
involved_in tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DALR anticodon-binding domain-containing protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026378.3 → NP_080654.3  DALR anticodon-binding domain-containing protein 3

    See identical proteins and their annotated locations for NP_080654.3

    Status: VALIDATED

    Source sequence(s)
    AK149963
    Consensus CDS
    CCDS40769.1
    UniProtKB/Swiss-Prot
    Q6PJN8, Q8C1T1, Q9D1L6
    Related
    ENSMUSP00000019183.9, ENSMUST00000019183.14
    Conserved Domains (1) summary
    smart00836
    Location:399 → 538
    DALR_1; DALR anticodon binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    108444710..108449972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155215.1 → XP_036011108.1  DALR anticodon-binding domain-containing protein 3 isoform X1

    Conserved Domains (1) summary
    smart00836
    Location:399 → 499
    DALR_1; DALR anticodon binding domain

  2. XM_017313540.2 → XP_017169029.1  DALR anticodon-binding domain-containing protein 3 isoform X2

    UniProtKB/Swiss-Prot
    Q6PJN8, Q8C1T1, Q9D1L6
    Conserved Domains (1) summary
    smart00836
    Location:399 → 538
    DALR_1; DALR anticodon binding domain

  3. XM_011242901.3 → XP_011241203.1  DALR anticodon-binding domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011241203.1

    Conserved Domains (1) summary
    smart00836
    Location:399 → 499
    DALR_1; DALR anticodon binding domain

  4. XM_006511793.3 → XP_006511856.1  DALR anticodon-binding domain-containing protein 3 isoform X3

    Conserved Domains (1) summary
    cl12020
    Location:362 → 440
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains

  5. XM_036155216.1 → XP_036011109.1  DALR anticodon-binding domain-containing protein 3 isoform X4

    Conserved Domains (1) summary
    smart00836
    Location:418 → 479
    DALR_1; DALR anticodon binding domain

  6. XM_036155217.1 → XP_036011110.1  DALR anticodon-binding domain-containing protein 3 isoform X5

    Conserved Domains (1) summary
    smart00836
    Location:130 → 269
    DALR_1; DALR anticodon binding domain

RNA

  1. XR_871095.3 RNA Sequence

  2. XR_003947985.2 RNA Sequence

  3. XR_001778994.3 RNA Sequence

  4. XR_379772.3 RNA Sequence

  5. XR_004935531.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PJN8.1 GenPept UniProtKB/Swiss-Prot:Q6PJN8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous