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Pbdc1 polysaccharide biosynthesis domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 67683, updated on 21-Apr-2024

Summary

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Official Symbol
Pbdc1provided by MGI
Official Full Name
polysaccharide biosynthesis domain containing 1provided by MGI
Primary source
MGI:MGI:1914933
See related
Ensembl:ENSMUSG00000031226 AllianceGenome:MGI:1914933
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610029G23Rik
Summary
Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 9.4), liver E14 (RPKM 5.5) and 25 other tissues See more
Orthologs
human all
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Genomic context

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Location:
X D; X 46.83 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (104123337..104160696)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (105079731..105117094)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 5530601H04 gene Neighboring gene swi5-dependent recombination DNA repair protein 1 homolog Neighboring gene STARR-positive B cell enhancer ABC_E11053 Neighboring gene MAGE family member E1 Neighboring gene predicted gene, 45946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein PBDC1
Names
UPF0368 protein Cxorf26 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281871.1 → NP_001268800.1  protein PBDC1 isoform 2

    See identical proteins and their annotated locations for NP_001268800.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate 3' exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK076889, AL671897, BM898616
    Consensus CDS
    CCDS72419.1
    UniProtKB/Swiss-Prot
    Q9D0B6
    Related
    ENSMUSP00000113288.2, ENSMUST00000119477.2
    Conserved Domains (1) summary
    cl04661
    Location:35 → 137
    Polysacc_synt_4; Polysaccharide biosynthesis

  2. NM_026312.5 → NP_080588.1  protein PBDC1 isoform 1

    See identical proteins and their annotated locations for NP_080588.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK030507, AL671897, BY389180
    Consensus CDS
    CCDS30334.1
    UniProtKB/Swiss-Prot
    B1AUP5, Q8C5Z2, Q9CVL0, Q9D0B6
    Related
    ENSMUSP00000033577.5, ENSMUST00000033577.11
    Conserved Domains (1) summary
    pfam04669
    Location:35 → 158
    Polysacc_synt_4; Polysaccharide biosynthesis

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    104123337..104160696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528267.4 → XP_006528330.1  protein PBDC1 isoform X3

    Conserved Domains (1) summary
    pfam04669
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

  2. XM_006528266.4 → XP_006528329.1  protein PBDC1 isoform X2

    Conserved Domains (1) summary
    pfam04669
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

  3. XM_006528269.4 → XP_006528332.1  protein PBDC1 isoform X5

    Conserved Domains (1) summary
    pfam04669
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

  4. XM_006528270.3 → XP_006528333.1  protein PBDC1 isoform X6

    Conserved Domains (1) summary
    pfam04669
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

  5. XM_006528268.4 → XP_006528331.1  protein PBDC1 isoform X4

    Conserved Domains (1) summary
    pfam04669
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

  6. XM_006528265.3 → XP_006528328.1  protein PBDC1 isoform X1

    Conserved Domains (1) summary
    cl04661
    Location:35 → 136
    Polysacc_synt_4; Polysaccharide biosynthesis

RNA

  1. XR_003953024.1 RNA Sequence

  2. XR_386928.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D0B6.1 GenPept UniProtKB/Swiss-Prot:Q9D0B6

Gene LinkOut

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