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4930524B15Rik RIKEN cDNA 4930524B15 gene [ Mus musculus (house mouse) ]

Gene ID: 67592, updated on 5-Mar-2024

Summary

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Official Symbol
4930524B15Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930524B15 geneprovided by MGI
Primary source
MGI:MGI:1914842
See related
Ensembl:ENSMUSG00000020299 AllianceGenome:MGI:1914842
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C5orf47 (chromosome 5 open reading frame 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 14.1) See more
Orthologs
human all
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Genomic context

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Location:
11 A4; 11 18.71 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (31915577..31929653)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (31965554..31979655)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element binding protein 4 Neighboring gene STARR-positive B cell enhancer mm9_chr11:31822573-31822874 Neighboring gene von Hippel-Lindau binding protein 1 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2982 Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_29098 Neighboring gene STARR-seq mESC enhancer starr_29099 Neighboring gene predicted gene, 35267 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:31899676-31899877 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:31899887-31900116 Neighboring gene neuron specific gene family member 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:31968884-31969085 Neighboring gene STARR-seq mESC enhancer starr_29101 Neighboring gene predicted gene 12108

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Evolutionarily conserved and testis-specific gene, 4930524B15Rik, is not essential for mouse spermatogenesis and fertility. Khan R, et al. Mol Biol Rep, 2020 Jul. PMID 32592116
  2. Single-cell RNA-Seq reveals a highly coordinated transcriptional program in mouse germ cells during primordial follicle formation. He Y, et al. Aging Cell, 2021 Jul. PMID 34174788, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C5orf47 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417868.1 → NP_001404797.1  uncharacterized protein C5orf47 homolog

    Status: VALIDATED

    Source sequence(s)
    AL662793, AL669946
    UniProtKB/Swiss-Prot
    Q24JP4, Q8CER9, Q9CQS0

  2. NM_026262.2 → NP_080538.1  uncharacterized protein C5orf47 homolog

    See identical proteins and their annotated locations for NP_080538.1

    Status: VALIDATED

    Source sequence(s)
    AL662793, AL669946
    Consensus CDS
    CCDS24515.1
    UniProtKB/Swiss-Prot
    Q24JP4, Q8CER9, Q9CQS0
    Related
    ENSMUSP00000099893.4, ENSMUST00000102829.4
    Conserved Domains (1) summary
    pfam15730
    Location:26 → 165
    DUF4680; Domain of unknown function (DUF4680)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    31915577..31929653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q24JP4.2 GenPept UniProtKB/Swiss-Prot:Q24JP4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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