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Zfp329 zinc finger protein 329 [ Mus musculus (house mouse) ]

Gene ID: 67230, updated on 11-Apr-2024

Summary

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Official Symbol
Zfp329provided by MGI
Official Full Name
zinc finger protein 329provided by MGI
Primary source
MGI:MGI:1921283
See related
Ensembl:ENSMUSG00000057894 AllianceGenome:MGI:1921283
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ZNF329; 2810439M05Rik; 4632409L22Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in genitourinary system. Orthologous to human ZNF329 (zinc finger protein 329). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 4.2), CNS E14 (RPKM 3.9) and 24 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 A1; 7 7.64 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12537705..12552844, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (12803778..12818895, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 18 Neighboring gene dnaJ homolog subfamily B member 6 pseudogene Neighboring gene zinc finger protein 329 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18057 Neighboring gene zinc finger protein 110 Neighboring gene predicted gene, 45971

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 329

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026046.3 → NP_080322.2  zinc finger protein 329

    See identical proteins and their annotated locations for NP_080322.2

    Status: VALIDATED

    Source sequence(s)
    AC107704, BC072665
    Consensus CDS
    CCDS20813.1
    UniProtKB/Swiss-Prot
    Q6GQR8, Q8BKL5, Q9D459
    UniProtKB/TrEMBL
    B2RSV9
    Related
    ENSMUSP00000072079.8, ENSMUST00000072222.8
    Conserved Domains (2) summary
    COG5048
    Location:195 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    12537705..12552844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153380.1 → XP_036009273.1  zinc finger protein 329 isoform X4

    UniProtKB/TrEMBL
    D3Z6L7
    Related
    ENSMUSP00000104186.2, ENSMUST00000108546.2
    Conserved Domains (3) summary
    COG5048
    Location:167 → 247
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:186 → 206
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:240 → 262
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_030242923.2 → XP_030098783.1  zinc finger protein 329 isoform X3

    UniProtKB/Swiss-Prot
    Q6GQR8, Q8BKL5, Q9D459
    UniProtKB/TrEMBL
    B2RSV9
    Conserved Domains (2) summary
    COG5048
    Location:195 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_006540315.4 → XP_006540378.1  zinc finger protein 329 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:226 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:245 → 265
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:482 → 506
    zf-H2C2_2; Zinc-finger double domain

  4. XM_011250682.2 → XP_011248984.1  zinc finger protein 329 isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:225 → 480
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:244 → 264
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:481 → 505
    zf-H2C2_2; Zinc-finger double domain

  5. XM_036153379.1 → XP_036009272.1  zinc finger protein 329 isoform X3

    UniProtKB/Swiss-Prot
    Q6GQR8, Q8BKL5, Q9D459
    UniProtKB/TrEMBL
    B2RSV9
    Conserved Domains (2) summary
    COG5048
    Location:195 → 450
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214 → 234
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. XR_003946543.2 RNA Sequence

  2. XR_003946544.2 RNA Sequence

  3. XR_004934171.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GQR8.2 GenPept UniProtKB/Swiss-Prot:Q6GQR8

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