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Tspan31 tetraspanin 31 [ Mus musculus (house mouse) ]

Gene ID: 67125, updated on 24-Apr-2024

Summary

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Official Symbol
Tspan31provided by MGI
Official Full Name
tetraspanin 31provided by MGI
Primary source
MGI:MGI:1914375
See related
Ensembl:ENSMUSG00000006736 AllianceGenome:MGI:1914375
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sas; 2700085A14Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain. Orthologous to human TSPAN31 (tetraspanin 31). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver adult (RPKM 83.9), placenta adult (RPKM 37.9) and 27 other tissues See more
Orthologs
human all
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Genomic context

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Location:
10 D3; 10 74.5 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (126903156..126906977, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127067287..127070972, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 27, subfamily b, polypeptide 1 Neighboring gene membrane associated ring-CH-type finger 9 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:126500339-126500526 Neighboring gene RIKEN cDNA A730063M14 gene Neighboring gene STARR-positive B cell enhancer ABC_E582 Neighboring gene cyclin dependent kinase 4 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Neighboring gene amplified in osteosarcoma Neighboring gene predicted gene, 40799

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Appearance of new tetraspanin genes during vertebrate evolution. Garcia-España A, et al. Genomics, 2008 Apr. PMID 18291621
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Thompson CL, et al. Neuron, 2014 Jul 16. PMID 24952961, Free PMC Article
  4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tetraspanin-31
Names
sarcoma amplified sequence
sarcoma-amplified sequence homolog
tspan-31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001429425.1 → NP_001416354.1  tetraspanin-31 isoform b precursor

    Status: VALIDATED

    Source sequence(s)
    AC134329

  2. NM_001429426.1 → NP_001416355.1  tetraspanin-31 isoform b precursor

    Status: VALIDATED

    Source sequence(s)
    AC134329

  3. NM_025982.4 → NP_080258.1  tetraspanin-31 isoform a

    See identical proteins and their annotated locations for NP_080258.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (a).
    Source sequence(s)
    AC134329
    Consensus CDS
    CCDS24227.1
    UniProtKB/Swiss-Prot
    Q9CQ88, Q9CUY7
    Related
    ENSMUSP00000057751.5, ENSMUST00000060991.6
    Conserved Domains (1) summary
    pfam00335
    Location:8 → 199
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    126903156..126906977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245229.2 → XP_030101089.1  tetraspanin-31 isoform X1

    Conserved Domains (1) summary
    pfam00335
    Location:2 → 118
    Tetraspannin; Tetraspanin family

  2. XM_030245230.1 → XP_030101090.1  tetraspanin-31 isoform X1

    Conserved Domains (1) summary
    pfam00335
    Location:2 → 118
    Tetraspannin; Tetraspanin family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CQ88.1 GenPept UniProtKB/Swiss-Prot:Q9CQ88

Gene LinkOut

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