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1700019D03Rik RIKEN cDNA 1700019D03 gene [ Mus musculus (house mouse) ]

Gene ID: 67080, updated on 5-Mar-2024

Summary

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Official Symbol
1700019D03Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700019D03 geneprovided by MGI
Primary source
MGI:MGI:1914330
See related
Ensembl:ENSMUSG00000043629 AllianceGenome:MGI:1914330
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
smAKAP; 2410136C24Rik
Summary
Predicted to enable protein kinase A regulatory subunit binding activity. Predicted to be located in plasma membrane. Is expressed in urinary system. Orthologous to human C2orf88 (chromosome 2 open reading frame 88). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 35.4), placenta adult (RPKM 4.0) and 5 other tissues See more
Orthologs
human all
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Genomic context

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See 1700019D03Rik in Genome Data Viewer
Location:
1 C1.1; 1 26.99 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (52961483..53031816, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (52922324..52992657, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1543 Neighboring gene inositol polyphosphate-1-phosphatase Neighboring gene STARR-positive B cell enhancer ABC_E3275 Neighboring gene 3-hydroxyisobutyryl-Coenzyme A hydrolase Neighboring gene STARR-seq mESC enhancer starr_00905 Neighboring gene heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_00906 Neighboring gene STARR-seq mESC enhancer starr_00907 Neighboring gene myostatin Neighboring gene predicted gene, 24349

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
  2. Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. Thiagarajan RD, et al. PLoS One, 2011 Feb 28. PMID 21386911, Free PMC Article
  3. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Clone Names

  • MGC58779

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables protein kinase A regulatory subunit binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small membrane A-kinase anchor protein
Names
UPF0733 protein C2orf88 homolog
small membrane AKAP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368274.1 → NP_001355203.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337, BU961456
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000140160.2, ENSMUST00000190831.7

  2. NM_001368276.1 → NP_001355205.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000140530.2, ENSMUST00000190726.2

  3. NM_001368277.1 → NP_001355206.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337, BU962204
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000140273.2, ENSMUST00000186266.2

  4. NM_001368278.1 → NP_001355207.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000110137.2, ENSMUST00000114493.2

  5. NM_001368279.1 → NP_001355208.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8

  6. NM_001368280.1 → NP_001355209.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337, BY272729
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000110136.2, ENSMUST00000114492.8

  7. NM_001368281.1 → NP_001355210.1  small membrane A-kinase anchor protein

    Status: VALIDATED

    Source sequence(s)
    AC129337
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000139750.2, ENSMUST00000191441.2

  8. NM_144953.3 → NP_659202.1  small membrane A-kinase anchor protein

    See identical proteins and their annotated locations for NP_659202.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All eight transcripts encode the same protein.
    Source sequence(s)
    AC129337
    Consensus CDS
    CCDS14949.1
    UniProtKB/Swiss-Prot
    Q9CPS8
    Related
    ENSMUSP00000055413.5, ENSMUST00000050567.11
    Conserved Domains (1) summary
    pfam15127
    Location:1 → 100
    SmAKAP; Small membrane A-kinase anchor protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    52961483..53031816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CPS8.1 GenPept UniProtKB/Swiss-Prot:Q9CPS8

Gene LinkOut

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