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Trappc13 trafficking protein particle complex 13 [ Mus musculus (house mouse) ]

Gene ID: 66975, updated on 5-Mar-2024

Summary

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Official Symbol
Trappc13provided by MGI
Official Full Name
trafficking protein particle complex 13provided by MGI
Primary source
MGI:MGI:1914225
See related
Ensembl:ENSMUSG00000021711 AllianceGenome:MGI:1914225
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2410002O22Rik; 2610524F24Rik
Summary
Predicted to be part of TRAPPIII protein complex. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 6.3), cortex adult (RPKM 5.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
13 D1; 13 56.28 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (104278661..104314974, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (104142153..104178466, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene neurolysin (metallopeptidase M3 family) Neighboring gene STARR-seq mESC enhancer starr_35530 Neighboring gene predicted gene, 30967 Neighboring gene STARR-positive B cell enhancer mm9_chr13:104881886-104882187 Neighboring gene small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta Neighboring gene STARR-positive B cell enhancer ABC_E3099 Neighboring gene STARR-positive B cell enhancer ABC_E8896 Neighboring gene STARR-positive B cell enhancer ABC_E385 Neighboring gene STARR-seq mESC enhancer starr_35535 Neighboring gene shieldin complex subunit 3 Neighboring gene tripartite motif-containing 23 Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E4090

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. TRAPP Complexes in Secretion and Autophagy. Kim JJ, et al. Front Cell Dev Biol, 2016. PMID 27066478, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in vesicle coating NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in vesicle tethering NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPII protein complex NAS
Non-traceable Author Statement
more info
 PubMed 
part_of TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm NAS
Non-traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 13
Names
UPF0533 protein C5orf44 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093759.1 → NP_001087228.1  trafficking protein particle complex subunit 13 isoform 2

    See identical proteins and their annotated locations for NP_001087228.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a shorter protein (isoform 2).
    Source sequence(s)
    AC154216, AK084373, AK149832, CF586080
    Consensus CDS
    CCDS49352.1
    UniProtKB/Swiss-Prot
    Q3TIR1, Q3TQS3, Q3UE00, Q8BN93, Q8VDJ6, Q9CWW3, Q9CXV2
    UniProtKB/TrEMBL
    J3QNW4
    Related
    ENSMUSP00000118316.2, ENSMUST00000141557.8
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 297
    DUF974; Protein of unknown function (DUF974)

  2. NM_001093760.1 → NP_001087229.1  trafficking protein particle complex subunit 13 isoform 3

    See identical proteins and their annotated locations for NP_001087229.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in a shorter protein (isoform 3).
    Source sequence(s)
    AC154216, AK149832, AK163342, CF586080
    Consensus CDS
    CCDS49351.1
    UniProtKB/TrEMBL
    J3QNW4
    Related
    ENSMUSP00000114406.2, ENSMUST00000144060.8
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 291
    DUF974; Protein of unknown function (DUF974)

  3. NM_001360778.1 → NP_001347707.1  trafficking protein particle complex subunit 13 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC154216
    UniProtKB/TrEMBL
    J3QNW4
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 292
    DUF974; Protein of unknown function (DUF974)

  4. NM_025879.2 → NP_080155.3  trafficking protein particle complex subunit 13 isoform 1

    See identical proteins and their annotated locations for NP_080155.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC154216, AK013956, AK149832, CF586080
    Consensus CDS
    CCDS49353.1
    UniProtKB/TrEMBL
    J3QNW4
    Related
    ENSMUSP00000022224.10, ENSMUST00000022224.16
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 297
    DUF974; Protein of unknown function (DUF974)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    104278661..104314974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_003546.1: Suppressed sequence

    Description
    NR_003546.1: This RefSeq was removed because it is now thought that this transcript represents a coding transript on another locus, Shld3.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3TIR1.1 GenPept UniProtKB/Swiss-Prot:Q3TIR1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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