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Neat1 nuclear paraspeckle assembly transcript 1 (non-protein coding) [ Mus musculus (house mouse) ]

Gene ID: 66961, updated on 17-Mar-2024

Summary

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Official Symbol
Neat1provided by MGI
Official Full Name
nuclear paraspeckle assembly transcript 1 (non-protein coding)provided by MGI
Primary source
MGI:MGI:1914211
See related
Ensembl:ENSMUSG00000092274 AllianceGenome:MGI:1914211
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
VINC; 2310043N10Rik
Summary
This gene produces a long non-coding RNA (lncRNA) that is retained in the nucleus where it forms the core structural component of the paraspeckle sub-organelles. It may act as a transcriptional regulator for numerous genes, including some genes involved in cancer progression. [provided by RefSeq, Mar 2015]
Orthologs
human all
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Genomic context

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Location:
19 A; 19 4.34 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5874736..5895508, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5824708..5845480, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene STARR-positive B cell enhancer ABC_E1970 Neighboring gene SCY1-like 1 (S. cerevisiae) Neighboring gene STARR-seq mESC enhancer starr_45401 Neighboring gene STARR-positive B cell enhancer ABC_E5679 Neighboring gene Malat1-associated small cytoplasmic RNA Neighboring gene STARR-seq mESC enhancer starr_45402 Neighboring gene metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) Neighboring gene STARR-seq mESC enhancer starr_45410 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:5844330-5844513 Neighboring gene STARR-seq mESC enhancer starr_45411 Neighboring gene FERM domain containing 8, opposite strand Neighboring gene FERM domain containing 8 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:5878208-5878317 Neighboring gene solute carrier family 25, member 45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exercise Mitigates Endothelial Pyroptosis and Atherosclerosis by Downregulating NEAT1 Through N6-Methyladenosine Modifications. Yang Q, et al. Arterioscler Thromb Vasc Biol, 2023 Jun. PMID 37078289
  2. lncRNA NEAT1 is required for splenic erythroid differentiation. Zhang X, et al. J Genet Genomics, 2023 Jun. PMID 36773722
  3. Up-regulation of lncRNA NEAT1 in cerebral ischemic stroke promotes activation of astrocytes by modulation of miR-488-3p/RAC1. Zheng H, et al. Exp Brain Res, 2023 Feb. PMID 36562806
  4. Long non-coding RNA Neat1 and paraspeckle components are translational regulators in hypoxia. Godet AC, et al. Elife, 2022 Dec 22. PMID 36546462, Free PMC Article
  5. lncRNA NEAT1 Downregulation Ameliorates the Myocardial Infarction of Mice by Regulating the miR-582-5p/F2RL2 Axis. Wu Z, et al. Cardiovasc Ther, 2022. PMID 36540097, Free PMC Article

See all (117) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. NEAT1 Deficiency Promotes Corneal Epithelial Wound Healing by Activating cAMP Signaling Pathway.
    Title: NEAT1 Deficiency Promotes Corneal Epithelial Wound Healing by Activating cAMP Signaling Pathway.
  2. Role of ATF3 triggering M2 macrophage polarization to protect against the inflammatory injury of sepsis through ILF3/NEAT1 axis.
    Title: Role of ATF3 triggering M2 macrophage polarization to protect against the inflammatory injury of sepsis through ILF3/NEAT1 axis.
  3. Molecular mechanism of Wilms tumour 1-associated protein in diabetes-related dry eye disease by mediating m6A methylation modification of lncRNA NEAT1.
    Title: Molecular mechanism of Wilms tumour 1-associated protein in diabetes-related dry eye disease by mediating m6A methylation modification of lncRNA NEAT1.
  4. METTL3-dependent N6-methyladenosine modification is involved in berberine-mediated neuroprotection in ischemic stroke by enhancing the stability of NEAT1 in astrocytes.
    Title: METTL3-dependent N6-methyladenosine modification is involved in berberine-mediated neuroprotection in ischemic stroke by enhancing the stability of NEAT1 in astrocytes.
  5. Knockdown of NEAT1 prevents post-stroke lipid droplet agglomeration in microglia by regulating autophagy.
    Title: Knockdown of NEAT1 prevents post-stroke lipid droplet agglomeration in microglia by regulating autophagy.
  6. Targeting lncRNA NEAT1 Hampers Alzheimer's Disease Progression.
    Title: Targeting lncRNA NEAT1 Hampers Alzheimer's Disease Progression.
  7. LncRNA NEAT1 suppresses cellular senescence in hepatocellular carcinoma via KIF11-dependent repression of CDKN2A.
    Title: LncRNA NEAT1 suppresses cellular senescence in hepatocellular carcinoma via KIF11-dependent repression of CDKN2A.
  8. LncRNA Neat1 targets NonO and miR-128-3p to promote antigen-specific Th17 cell responses and autoimmune inflammation.
    Title: LncRNA Neat1 targets NonO and miR-128-3p to promote antigen-specific Th17 cell responses and autoimmune inflammation.
  9. lncRNA NEAT1 is required for splenic erythroid differentiation.
    Title: lncRNA NEAT1 is required for splenic erythroid differentiation.
  10. Exercise Mitigates Endothelial Pyroptosis and Atherosclerosis by Downregulating NEAT1 Through N6-Methyladenosine Modifications.
    Title: Exercise Mitigates Endothelial Pyroptosis and Atherosclerosis by Downregulating NEAT1 Through N6-Methyladenosine Modifications.
Submit: New GeneRIF Correction See all GeneRIFs (85)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • virus-inducible ncRNA

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular component maintenance IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within cellular component maintenance IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nuclear body organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in paraspeckles IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003513.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant has a shorter 3' end compared to the MENbeta variant. This results in a shorter transcript, known as MENepsilon.
    Source sequence(s)
    AA738862, AK159773

  2. NR_131212.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant represents the longer transcript, known as MENbeta.
    Source sequence(s)
    GQ859163
    Related
    ENSMUST00000173672.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5874736..5895508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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