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2310030G06Rik RIKEN cDNA 2310030G06 gene [ Mus musculus (house mouse) ]

Gene ID: 66952, updated on 5-Mar-2024

Summary

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Official Symbol
2310030G06Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310030G06 geneprovided by MGI
Primary source
MGI:MGI:1914202
See related
Ensembl:ENSMUSG00000032062 AllianceGenome:MGI:1914202
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2610024D04Rik
Summary
Is expressed in pancreas epithelium. Orthologous to human C11orf52 (chromosome 11 open reading frame 52). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in placenta adult (RPKM 27.5), kidney adult (RPKM 13.8) and 13 other tissues See more
Orthologs
human all
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Genomic context

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See 2310030G06Rik in Genome Data Viewer
Location:
9 A5.3; 9 27.75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (50650991..50657827, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (50739691..50746527, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide S-acetyltransferase Neighboring gene DIX domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_24115 Neighboring gene predicted gene, 39337 Neighboring gene predicted gene, 51674 Neighboring gene STARR-seq mESC enhancer starr_24116 Neighboring gene STARR-seq mESC enhancer starr_24117 Neighboring gene STARR-seq mESC enhancer starr_24121 Neighboring gene crystallin, alpha B Neighboring gene heat shock protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E3828 Neighboring gene cilia and flagella associated protein 68

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of transcripts with enriched expression in the developing and adult pancreas. Hoffman BG, et al. Genome Biol, 2008. PMID 18554416, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C11orf52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025865.3 → NP_080141.2  uncharacterized protein C11orf52 homolog

    Status: VALIDATED

    Source sequence(s)
    AC113987
    Consensus CDS
    CCDS23170.1
    UniProtKB/Swiss-Prot
    Q9CPS4, Q9D8L0
    Related
    ENSMUSP00000034564.3, ENSMUST00000034564.4
    Conserved Domains (1) summary
    pfam15147
    Location:1 → 127
    DUF4578; Domain of unknown function (DUF4578)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    50650991..50657827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D8L0.1 GenPept UniProtKB/Swiss-Prot:Q9D8L0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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