U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zfp936 zinc finger protein 936 [ Mus musculus (house mouse) ]

Gene ID: 668620, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Zfp936provided by MGI
Official Full Name
zinc finger protein 936provided by MGI
Primary source
MGI:MGI:3642994
See related
Ensembl:ENSMUSG00000064194 AllianceGenome:MGI:3642994
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm9272; EG435970; EG668620; I1C0022H11Rik
Summary
Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human ZNF101 (zinc finger protein 101) and ZNF699 (zinc finger protein 699). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
7 B3; 7 28.25 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (42763590..42841533)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (43114166..43192109)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 158 Neighboring gene ribosomal protein L18A, pseudogene 4 Neighboring gene predicted gene, 17768 Neighboring gene STARR-seq mESC enhancer starr_18756 Neighboring gene predicted gene, 53348 Neighboring gene STARR-seq mESC enhancer starr_18757 Neighboring gene zinc finger protein 120 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18760 Neighboring gene expressed sequence EU599041 Neighboring gene STARR-seq mESC enhancer starr_18761 Neighboring gene predicted gene, 35588

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC76792

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein 936

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034893.2 → NP_001030065.1  zinc finger protein 936

    See identical proteins and their annotated locations for NP_001030065.1

    Status: VALIDATED

    Source sequence(s)
    AC123045, AC167161
    Consensus CDS
    CCDS80709.1
    UniProtKB/TrEMBL
    Q3ULA8
    Related
    ENSMUSP00000143800.2, ENSMUST00000202535.4
    Conserved Domains (4) summary
    COG5048
    Location:76 → 420
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235 → 255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:416 → 440
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    42763590..42841533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242903.2 → XP_030098763.1  zinc finger protein 936 isoform X1

    UniProtKB/TrEMBL
    Q3ULA8
    Conserved Domains (4) summary
    COG5048
    Location:76 → 420
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:235 → 255
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:416 → 440
    zf-H2C2_2; Zinc-finger double domain

  2. XM_030242904.1 → XP_030098764.1  zinc finger protein 936 isoform X2

    Related
    ENSMUSP00000072608.4, ENSMUST00000072829.4
    Conserved Domains (3) summary
    COG5048
    Location:44 → 388
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:203 → 223
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:384 → 408
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous