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Slc16a9 solute carrier family 16 (monocarboxylic acid transporters), member 9 [ Mus musculus (house mouse) ]

Gene ID: 66859, updated on 5-Mar-2024

Summary

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Official Symbol
Slc16a9provided by MGI
Official Full Name
solute carrier family 16 (monocarboxylic acid transporters), member 9provided by MGI
Primary source
MGI:MGI:1914109
See related
Ensembl:ENSMUSG00000037762 AllianceGenome:MGI:1914109
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1200003C15Rik; 4930425B13Rik
Summary
Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport and urate metabolic process. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in choroid invagination; choroid plexus; and meninges. Orthologous to human SLC16A9 (solute carrier family 16 member 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in kidney adult (RPKM 22.1), lung adult (RPKM 17.4) and 11 other tissues See more
Orthologs
human all
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Genomic context

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Location:
10 B5.3; 10 36.68 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (70081106..70121781)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (70245276..70285951)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51771 Neighboring gene STARR-positive B cell enhancer ABC_E5146 Neighboring gene coiled-coil domain containing 6 Neighboring gene STARR-seq mESC enhancer starr_27073 Neighboring gene myoregulin Neighboring gene uncharacterized LOC118567787 Neighboring gene STARR-seq mESC enhancer starr_27078 Neighboring gene STARR-seq mESC enhancer starr_27079 Neighboring gene predicted gene, 40687 Neighboring gene predicted gene, 33704 Neighboring gene STARR-seq mESC enhancer starr_27081 Neighboring gene putative 60S ribosomal protein L39-like 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cellular expression of the monocarboxylate transporter (MCT) family in the placenta of mice. Nagai A, et al. Placenta, 2010 Feb. PMID 20022372
  2. Single-Cell Transcriptomic Analyses of the Developing Meninges Reveal Meningeal Fibroblast Diversity and Function. DeSisto J, et al. Dev Cell, 2020 Jul 6. PMID 32634398, Free PMC Article
  3. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
  4. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carnitine transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
  
enables creatine transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
  
enables monocarboxylic acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carnitine transmembrane transport ISO
Inferred from Sequence Orthology
more info
  
involved_in creatine transmembrane transport ISO
Inferred from Sequence Orthology
more info
  
involved_in monocarboxylic acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in urate metabolic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
monocarboxylate transporter 9
Names
MCT 9
solute carrier family 16 member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025807.3 → NP_080083.2  monocarboxylate transporter 9

    See identical proteins and their annotated locations for NP_080083.2

    Status: PROVISIONAL

    Source sequence(s)
    AC122923
    Consensus CDS
    CCDS23913.1
    UniProtKB/Swiss-Prot
    Q0P652, Q7TM99
    Related
    ENSMUSP00000047912.7, ENSMUST00000046807.7
    Conserved Domains (1) summary
    cd17428
    Location:12 → 479
    MFS_MCT9; Monocarboxylate transporter 9 of the Major Facilitator Superfamily of transporters

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    70081106..70121781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513960.5 → XP_006514023.1  monocarboxylate transporter 9 isoform X1

    See identical proteins and their annotated locations for XP_006514023.1

    UniProtKB/Swiss-Prot
    Q0P652, Q7TM99
    Conserved Domains (1) summary
    cd17428
    Location:12 → 479
    MFS_MCT9; Monocarboxylate transporter 9 of the Major Facilitator Superfamily of transporters
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7TM99.1 GenPept UniProtKB/Swiss-Prot:Q7TM99

Gene LinkOut

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